Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07170 157 / 1e-49 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G48680 107 / 1e-29 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038185 [exp] 266 / 2e-92 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10022780 [exp] 180 / 3e-58 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10011841 [exp] 182 / 2e-56 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244700 [exp] 183 / 9e-60 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 163 / 8e-52 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025917 pacid=23177627 polypeptide=Lus10025917 locus=Lus10025917.g ID=Lus10025917.BGIv1.0 annot-version=v1.0 ATGTATGCCGATAAAGTGGAAGCTTCGGGGAAAATGTCCGTGAAGGAGCGTCTCAATGGCAGTTCCGCCGCCGACTCTTCTCGCTGGAGACAAGTTACTG GAAAAAGGCGAAGGCAAGATGACAAGTGGGAGCATGATCTCTTTGATGATGACAAACCGCGTACTTCAAATCGCAGAATTGATGGTCAAGATCTTCGATT GAAGCTCCAGAAGAAAAGTCAAGCACCTCAAAGTGGGAGGGGAGGTGTGCGGGATTTGAGAGAGAAGCTATCTGGGACAGTGATTCCACAGCCGTTGAAT TCTGATCCACCAAAGTCAAAACAAGAGGCTGCTAAACCAGCTAGGAGAAATGTTGCTGTTGAAGTTCCTGAACTCCAGTTGAAAAAAGTTGCCAATGTAG CCAGCAAAAAAAGGCCTCAGACAAAGGCATCTACTATTTCTTTTTAA
AA sequence Show only first row Show all	>Lus10025917 pacid=23177627 polypeptide=Lus10025917 locus=Lus10025917.g ID=Lus10025917.BGIv1.0 annot-version=v1.0 MYADKVEASGKMSVKERLNGSSAADSSRWRQVTGKRRRQDDKWEHDLFDDDKPRTSNRRIDGQDLRLKLQKKSQAPQSGRGGVRDLREKLSGTVIPQPLN SDPPKSKQEAAKPARRNVAVEVPELQLKKVANVASKKRPQTKASTISF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	1.0	0.9215
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	2.4	0.8686
AT3G48210			unknown protein		Lus10042089 [exp]	2.4	0.8773
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	3.5	0.8749
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	4.0	0.8739
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	5.5	0.8739
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	6.6	0.8408
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	6.9	0.8674
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	8.2	0.8442
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	8.4	0.8680

Compare expression of checked genes

Lus10025917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.