Plant FIBer expression Database

Lus10025918 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07140 699 / 0 GPI transamidase component Gpi16 subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038183
[exp]
1098 / 0 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G190600
[exp]
832 / 0 AT3G07140 790 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04113 Gpi16 Gpi16 subunit, GPI transamidase component
Representative CDS sequence
>Lus10025918 pacid=23177555 polypeptide=Lus10025918 locus=Lus10025918.g ID=Lus10025918.BGIv1.0 annot-version=v1.0
ATGTTACTTCCCCTTCGATCCACGCTTCTGTTATCACTCTTTCTACTGCTTTCCTCTCGGATGCTCCGATGTGGATCAGCGGTCGAGCTAGTCGGAGGAG
GGGAAGAGTTCCATGAAGAGCTGCTGTTGAAGCCTTTACCTGATCGGAAAGTCTTGGCCCATTTCCACTTTCAAAGTAGAGCTCCGGAGTCCAATGGCCG
CCACCATCATCTCTTCCCAAAATCCATCTCTCAACTGGTCCAGAAATTCAGAGTTAAGGAAATGGAATTATCTTTCACACAAGGTCGTTGGAGCTATGAA
CGTTGGGGTGGATTTGATCCCACATCTAGCAGCAACGCTAAGCCTCCTGGAGTTGAGTTGTGGGCCGTCTTTGATGTGTCTCCAGACCAAGTTGATTCTT
ACTGGAAGAATTTAACCCACACCCTTTCTGGACTTTTTTGTGCCTCCATTAATTTTCTGGAGTCATCGACCATGTATTCTGCACCTAAAAGGAGCTTCCG
GGAGACACCAGGAAGTCTCAGATATGGTACATTGCCGCGTGAAGCTGTTTGCACCGAGAACCTAACTCCTTGGTTGAAGCTCCTTCCATGTCGAGATAAA
GCTGGTCTCTCGTCCTTGATGGATAGACCATCAATCTACAAAGGCTTTTATCATTCTCAACGGTTGCATTTAACCTCTAATGCATCACGTCTTGTAGAGA
CGGATTCGGACGTCACTCTGCAACAGACACTTACTGTTGTTCTTCAGCCGGACAGCGACTCAATTCATTCACGTGAGAGAGAATTTCAACCGAGTTGGTC
TTTACGTTCGATCTTTGGACGGAAGGTTAGTGGCAAATGTGGTCTTGCTCAGTCTAGTAAAGTGTACCTTCAGCTTGAAAAGGATATAATTTCAGAACAA
AAGGAAAATGTGCATGATACTCCTACTAGTTTAGCATCCGTAGGATTTACGAGTGAAACCAGTTTTGAGTTGTCAGTTAACCCAGACAGAGTAATTGAGG
AACTAAATCAGCAGCAGCGGAAGGGTTCCTCTGTTCTCTATGAATTTTGGGTCGAGAAGTACAATGAGTCTTGGCCATTTGACCTTGGCTTGAAGTGGAA
GTCTCCTGTTTTCTGGTCATGTCAACAAGCACCATTGCATGCTAGTAGGTTCTTGATGGGCAGTGGAAACGAAAGAGGTGCAATAGCTATCTTACTGCAG
TCTACCGGATTCTTGGAGGCTCTTAATGTAGGAGATGGATGTGAACTGCAAGTTGATGTTTTTCAAGTTGTGCCATGGTACATAAAAGTATATTATCATA
CCTTAAAATTGTTTGTAGATGATCAAGAGCAGCCTGTTGGAAATTTCGTAGAGAAAGTTCATGTTTCCCCTTCAATTGACAAAAAATCTCCCGGAATGAT
GGAAATGGTTCTGAAACTGCCTTGTGATGTGAGATCAGCTGCATTGACGTTGGATTTTGATAAGCTTCTCAGCATTGCCAGTAACACTGTAATATTTCTT
GAGCAGGGGTTTTTGCACATCGATGAATATCCTCCGGACGCTAATCAAGGATTCGATATCCCATCGGCAGTTATAAGTTTTACTGGCTTCCATTCAGGCA
TGCATCTTCCAAGCAACGATTCAATTCAAAAATCGCCTATGCTATCCAGCTTTCAGGAAAAGAACCATGTGAAGTCCTACACAGAAGTATTACTTGTACC
TTTGACTACGCCTGATTTCAGCATGCCTTACAATGTCATTACCATCACATGCACAGTGTTTGCGCTCTACTTCGGGTCTCTGCTCAATGTACTCCGGCGG
AGAGCTGCTGAGGAGGAGAGGTACCTTAAAGAAAAAGCTACCAAGAAAAATGGCCCCCTATCGGAACTGGTGTCGAGATTATCAGCTAAGCTGAGAGGAA
AGCCATTGGAATCTCCACAACCCTCTTCTGGTTCATCATCCTTGATCAACTCAAAACTAGCCATGAAGGTTGTCTTGGTGGCTGGAATTGCTGTTGTTTG
GCAATTGTATTTTACCTGA
AA sequence
>Lus10025918 pacid=23177555 polypeptide=Lus10025918 locus=Lus10025918.g ID=Lus10025918.BGIv1.0 annot-version=v1.0
MLLPLRSTLLLSLFLLLSSRMLRCGSAVELVGGGEEFHEELLLKPLPDRKVLAHFHFQSRAPESNGRHHHLFPKSISQLVQKFRVKEMELSFTQGRWSYE
RWGGFDPTSSSNAKPPGVELWAVFDVSPDQVDSYWKNLTHTLSGLFCASINFLESSTMYSAPKRSFRETPGSLRYGTLPREAVCTENLTPWLKLLPCRDK
AGLSSLMDRPSIYKGFYHSQRLHLTSNASRLVETDSDVTLQQTLTVVLQPDSDSIHSREREFQPSWSLRSIFGRKVSGKCGLAQSSKVYLQLEKDIISEQ
KENVHDTPTSLASVGFTSETSFELSVNPDRVIEELNQQQRKGSSVLYEFWVEKYNESWPFDLGLKWKSPVFWSCQQAPLHASRFLMGSGNERGAIAILLQ
STGFLEALNVGDGCELQVDVFQVVPWYIKVYYHTLKLFVDDQEQPVGNFVEKVHVSPSIDKKSPGMMEMVLKLPCDVRSAALTLDFDKLLSIASNTVIFL
EQGFLHIDEYPPDANQGFDIPSAVISFTGFHSGMHLPSNDSIQKSPMLSSFQEKNHVKSYTEVLLVPLTTPDFSMPYNVITITCTVFALYFGSLLNVLRR
RAAEEERYLKEKATKKNGPLSELVSRLSAKLRGKPLESPQPSSGSSSLINSKLAMKVVLVAGIAVVWQLYFT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07140 GPI transamidase component Gpi... Lus10025918
[exp]
0 1
AT1G73450 Protein kinase superfamily pro... Lus10042297
[exp]
2.2 0.9164
AT5G38690 Zinc-finger domain of monoamin... Lus10033539
[exp]
2.8 0.9050
AT1G09870 histidine acid phosphatase fam... Lus10040951
[exp]
3.3 0.8911
AT1G50710 unknown protein Lus10043109
[exp]
3.5 0.8911
AT5G05970 NEDD1 NEURAL PRECURSOR CELL EXPRESSE... Lus10030162
[exp]
3.7 0.9095
AT5G59160 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, ty... Lus10040742
[exp]
4.1 0.8865
AT5G65950 unknown protein Lus10041289
[exp]
4.6 0.8980
AT5G17410 Spc97 / Spc98 family of spindl... Lus10026855
[exp]
7.5 0.8955
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Lus10040194
[exp]
9.8 0.9017
AT3G13300 VCS VARICOSE, Transducin/WD40 repe... Lus10038742
[exp]
14.3 0.9020

Lus10025918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.