Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13090 318 / 3e-109 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT3G25050 302 / 7e-103 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT4G13080 301 / 2e-102 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G13870 279 / 8e-94 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G65730 260 / 2e-86 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G03210 257 / 3e-85 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT2G06850 255 / 2e-84 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G37800 251 / 1e-82 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT4G28850 249 / 4e-82 ATXTH26, XTH26, XTR18 xyloglucan endotransglucosylase/hydrolase 26 (.1) AT3G23730 249 / 4e-82 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038182 [exp] 541 / 0 AT4G13090 319 / 2e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10022782 [exp] 293 / 1e-99 AT3G25050 246 / 5e-81 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10011845 [exp] 290 / 3e-98 AT3G25050 241 / 3e-79 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10022784 [exp] 286 / 1e-96 AT3G25050 239 / 1e-78 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10003022 [exp] 269 / 9e-90 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 267 / 1e-88 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 256 / 7e-85 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10031586 [exp] 256 / 8e-85 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10040121 [exp] 256 / 9e-85 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244200 [exp] 351 / 3e-122 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.003G159700 [exp] 269 / 7e-90 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.001G071000 [exp] 266 / 7e-89 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 261 / 8e-87 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.013G152400 [exp] 261 / 9e-87 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.007G008500 [exp] 254 / 9e-84 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.019G125000 [exp] 252 / 3e-83 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.002G060500 [exp] 247 / 2e-81 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 244 / 5e-80 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 243 / 1e-79 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10025919 pacid=23177638 polypeptide=Lus10025919 locus=Lus10025919.g ID=Lus10025919.BGIv1.0 annot-version=v1.0 ATGAGGTCGACAAATGCTATTCTTCCAGTGGCATCAACGACGACACTATGCCTCCTTCTTTTGGTGATGTTCGGTCGCGGGAATAGCGTCGGCGGCGAAA CTGCCTTTGATGAGAATTATGGTGTAACGTGGGGGTATGATCACGTACTTGACCAAGGAACAGAAGTTCAGCTCTCCATGGATAGATCTTCAGGCTCTGG ATTTGCATCAAAAGTGAGTTACGGATCTGGATTCTTTCGCCTGCGGATCAAGCTCCCCGACAGAAACTCTGCTGGAGTTGTCACTGCTTTCTACCTCTCT TCGTCCGGGTCGAGGCATGATGAACTGGACATGGAGTTCTTGGGGAACTTACAAGGTAAACCAAAATACTTGCAGACAAACGTGTTCGTCAACGGCAAGG GAAATAGGGAGCAAAGGTTTGAGCTCTGGTTCGACCCCACTGTCGATTTTCACAACTACACTATTCGTTGGAACCAACATCTCGTCGTATTTATTGTGGA CTCGGTTCCAATAAGAGTACTGAAGAATGCGAACGGAATCGAATTTCCAACGTCAAGGGCAATGAAGGTGGTGGCGAGCATTTGGAACGGAGAGGATTGG GCGACGGACGGAGGCAAGACTAAAATAGACTGGAACTACGCACCTTTCAGGGCCTACTTCAGAGGGTTCGACGTCAACGGCTGCCCCGCGGCGGAAGGGA CCGACATCAGTCCCTGTTCATCCCCGAATTACTGGTGGAACGGGCAGCAGTTCTGGACGCTGGACAATAACCAGCTGAGTGCGTACAGGGACGCACGGAG GCGGTACATGACTTACGACTACTGCGCTGATGCCGCACGGTATCCTACCCCTCCCCCGGAATGCGGTTACCAGGGATAA
AA sequence Show only first row Show all	>Lus10025919 pacid=23177638 polypeptide=Lus10025919 locus=Lus10025919.g ID=Lus10025919.BGIv1.0 annot-version=v1.0 MRSTNAILPVASTTTLCLLLLVMFGRGNSVGGETAFDENYGVTWGYDHVLDQGTEVQLSMDRSSGSGFASKVSYGSGFFRLRIKLPDRNSAGVVTAFYLS SSGSRHDELDMEFLGNLQGKPKYLQTNVFVNGKGNREQRFELWFDPTVDFHNYTIRWNQHLVVFIVDSVPIRVLKNANGIEFPTSRAMKVVASIWNGEDW ATDGGKTKIDWNYAPFRAYFRGFDVNGCPAAEGTDISPCSSPNYWWNGQQFWTLDNNQLSAYRDARRRYMTYDYCADAARYPTPPPECGYQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	0	1
					Lus10003843 [exp]	3.5	1.0000
					Lus10001326 [exp]	4.1	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	4.9	1.0000
					Lus10021612 [exp]	5.5	1.0000
AT3G26950			unknown protein		Lus10035179 [exp]	6.0	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10036331 [exp]	6.2	1.0000
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	6.9	1.0000
					Lus10026755 [exp]	7.3	1.0000
					Lus10017783 [exp]	7.7	1.0000
					Lus10018798 [exp]	8.1	1.0000

Compare expression of checked genes

Lus10025919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.