Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48720 226 / 6e-73 XRI1, XRI x-ray induced transcript 1 (.1.2) AT2G01990 56 / 3e-09 unknown protein AT1G14630 50 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038181 [exp] 444 / 3e-158 AT5G48720 253 / 4e-83 x-ray induced transcript 1 (.1.2) Lus10013793 [exp] 62 / 7e-11 AT2G01990 118 / 1e-31 unknown protein Lus10039139 [exp] 58 / 2e-09 AT1G14630 120 / 3e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244000 [exp] 276 / 1e-92 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2) Potri.014G190000 [exp] 215 / 3e-69 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.010G100700 [exp] 57 / 2e-09 AT1G14630 166 / 1e-50 unknown protein Potri.008G140900 [exp] 53 / 7e-08 AT2G01990 148 / 3e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025920 pacid=23177491 polypeptide=Lus10025920 locus=Lus10025920.g ID=Lus10025920.BGIv1.0 annot-version=v1.0 ATGGATTATAGCACCAACAGCAGCAGCGCAGGAAATTGGGATTGGCTGGGGGCGAATCATGATCTCCCCAAGAATGCCAATCCAGATACATTATGGAATG AGGTGACACTTAATGAAGAAGATATCTCTTATATGTTTGATGAAACCACTCCGATCAAAGAATGCGGTGATTTGGCTTATCATGATGAAAATTATGATAG TATGAATAAGGAGCTAGAAGGATGTAGAGAGACTTCTTCGCAGATAAAGAGGCGACGTATGCTACAATTTGACACTGAAGTGGAAAGGGCAGATTCTCTG GAAGATGGTTCACCTCTTGCATCACAATGGGTTCAAGGGGCAACAGGCTGTGATGATCTGGATCAGACATCTGAAAGATGGCTTGATGAATGCTTGAAGG ATGTCGATATACAGTGTAGTCCTGTTGACATGGACATTGCTGGATCATCAGAAGTTCAAATTGACATCTCTGACCCTTCTGGTGTAGAGTTCTGTGATCC ACCTCCTGAGCTTGCAGCTAATACAGTTCCAAAAAGGGTTTCTCGGCTTCCCAAGAATATAATATTGAGAGGGAGGAAGTCAAGCATTCAACCTGCAAGC AAGTTACCTTCTTCTGTTGCGTATCCGTTTGCGTTCATCAAACCCTGTGCATATCATGGGGATGTGACCCTGAAGGACATAAACCAAAAGATCCACACTC CACCGCCGCCACCAAAACCAAAGTTGCCGGAAGCTTACCCAACCTCAGCTTTCTCTGGTAAGCTAGTTGTTGGGAAGACTAAAATCCGTACAGAAGGAGG AAAAGGAAGCATCACAATCATGAGAACTGAAGGATGA
AA sequence Show only first row Show all	>Lus10025920 pacid=23177491 polypeptide=Lus10025920 locus=Lus10025920.g ID=Lus10025920.BGIv1.0 annot-version=v1.0 MDYSTNSSSAGNWDWLGANHDLPKNANPDTLWNEVTLNEEDISYMFDETTPIKECGDLAYHDENYDSMNKELEGCRETSSQIKRRRMLQFDTEVERADSL EDGSPLASQWVQGATGCDDLDQTSERWLDECLKDVDIQCSPVDMDIAGSSEVQIDISDPSGVEFCDPPPELAANTVPKRVSRLPKNIILRGRKSSIQPAS KLPSSVAYPFAFIKPCAYHGDVTLKDINQKIHTPPPPPKPKLPEAYPTSAFSGKLVVGKTKIRTEGGKGSITIMRTEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10025920 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	4.9	0.8077
AT2G26970			Polynucleotidyl transferase, r...		Lus10037420 [exp]	11.5	0.8087
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10002295 [exp]	16.5	0.8263
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10027282 [exp]	19.1	0.7860
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	22.9	0.7772
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	24.3	0.7952
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	28.1	0.7639
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	30.2	0.8057
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	32.0	0.7644
AT4G24265			unknown protein		Lus10007441 [exp]	32.2	0.7930

Compare expression of checked genes

Lus10025920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.