Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31970 409 / 6e-138 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31940 406 / 6e-137 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT3G25180 384 / 3e-128 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31950 353 / 1e-116 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 333 / 2e-108 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37310 320 / 1e-103 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37320 318 / 6e-103 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37370 315 / 7e-102 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37330 311 / 3e-100 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37340 309 / 3e-99 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038178 [exp] 976 / 0 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025904 [exp] 685 / 0 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 596 / 0 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 488 / 1e-168 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 483 / 6e-167 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 462 / 2e-158 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 446 / 1e-152 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 447 / 3e-152 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 428 / 9e-146 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 545 / 0 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 456 / 3e-156 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 432 / 2e-147 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 424 / 4e-144 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.016G008500 [exp] 422 / 7e-143 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 421 / 1e-142 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037300 [exp] 404 / 4e-136 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 402 / 5e-135 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 402 / 7e-135 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 396 / 6e-133 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025923 pacid=23177579 polypeptide=Lus10025923 locus=Lus10025923.g ID=Lus10025923.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTCAACTTCTCCGACCATGTTGTAGCCATTTCCGGCCTAGCAATAACCACCCTTTTCCTCTTCTACTACAACCTCCGTCAACGTCACAACA ACAAAATCAGCAACAACAACAAATATCCTACTCTGCCACCGGAGCCATCAGGCGGTCTTCCAATCTTAGGCCACCTCCTTCAACTCGCTTCTCCAAACAA AACACTCGCCCAGTCCTTCGTCGAAATGTCGGACCGTTACGGTCCGATCTTCACCGTCCGGCTCGGCACCCAGCGAGCCGTTGTGGTCAACGACCCGAAA ACGGTCCAAGAATGCTTCACCACACACGACAGAGCATTAGCATCTCGCCCCGTGACAAGCCAGTCAGAGTACTTACACTACCAATACGCGGCGTTGGGGT CAACCCCTTACGGATCTTACTGGCGCGACATCCGGAAGCTGGCCGTCACTCAGCTGCTCTCCGCCACCCGCCTGAAATCGCTCCGACACGTTCAGGTGGC GGAGATTGACATTCTGATGAAGGAATTGTATAATATTAGCCAGAGGAAGAGTGAAGGTGTGGTGGTCGGGATTAGTGAGCTTCTGGATCAGCTGGGTTTC AACCTGATTACGACTTTGATTGCTGGGAAAAGGTATTTCAATTATGGGGTTGTCGGCGGCGATGATTATGAGGAAGGGGAGAGGATCGGGGAGCTGATGA GGGAGTTCATGAGGATGTGTGCGAAATTTGTGATGTCGGATTTCGTGCCGTTTATGGGATGGACGAATTGGTTTGCGGGGCCTGTGAAATCGATGAAGAG GACTGGTAAGGAATTGGATGAGGTGATGCAGAGTTGGATTGATGAACATAAGCTGAAGAAGAACAAACAAGAAGATGAGAAGGACTTCATTGATGTGCTG TTGTCCACCGTTGATGCTGATTTTGCTCAGCATTACCCGCCTGAAATGGTCATCAAGGCTACTGCACTGACGATGATTGTGGCAGGTGCCGACACAACAG CAGTCACGATGACATGGATCCTGTCCAACTTGTTAAACAACCCACACGCAATGGAGCTCGCTCAACAAGAGCTAGACACAAAAGTCGGCAGAACTCGAAT AGTCCAATACTCCGACATCGAAAACCTTGTCTACCTCCAAGCCGTGGTCAAGGAAACTCTCCGCCTTTGCCCGTCAGCACCAACAGCGGTCCCACACGTG GCGATGGAGGACTGCACCGTCAGTGGTTACCACGTGCCAAAGGGTTCGATGGTGTTTGCCAACTTGTTGAAGTTGCACCGAGACCCCAACGTTTGGTCGG ATGCTGATGTTTTCAAGCCAGAGAGGTTCCTTGATGATCAATACTCAGGAAAGAATAACGACTGTGAGCTGATTCCATTTGGGTTTGGCAGAAGGTCTTG TCCCGGAATGGCGTTTGCGAATCAAGTTGTGAACTTGACGGTTGCTAGGATTCTACAAGGTTTTGACGTTACGAGTTATCAGATTCCGGTGGATATGAGG CAGGGTTTAGGTCTCACTATGCCTAAAACAACTCCTTTAGAGGTTGTGCTTACCCCTCGCCTCCCTAATGAACTCTACCAACTTTAA
AA sequence Show only first row Show all	>Lus10025923 pacid=23177579 polypeptide=Lus10025923 locus=Lus10025923.g ID=Lus10025923.BGIv1.0 annot-version=v1.0 MELFNFSDHVVAISGLAITTLFLFYYNLRQRHNNKISNNNKYPTLPPEPSGGLPILGHLLQLASPNKTLAQSFVEMSDRYGPIFTVRLGTQRAVVVNDPK TVQECFTTHDRALASRPVTSQSEYLHYQYAALGSTPYGSYWRDIRKLAVTQLLSATRLKSLRHVQVAEIDILMKELYNISQRKSEGVVVGISELLDQLGF NLITTLIAGKRYFNYGVVGGDDYEEGERIGELMREFMRMCAKFVMSDFVPFMGWTNWFAGPVKSMKRTGKELDEVMQSWIDEHKLKKNKQEDEKDFIDVL LSTVDADFAQHYPPEMVIKATALTMIVAGADTTAVTMTWILSNLLNNPHAMELAQQELDTKVGRTRIVQYSDIENLVYLQAVVKETLRLCPSAPTAVPHV AMEDCTVSGYHVPKGSMVFANLLKLHRDPNVWSDADVFKPERFLDDQYSGKNNDCELIPFGFGRRSCPGMAFANQVVNLTVARILQGFDVTSYQIPVDMR QGLGLTMPKTTPLEVVLTPRLPNELYQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	0	1
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	1.0	0.9522
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	2.8	0.9479
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	3.5	0.9382
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	7.5	0.9115
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	9.2	0.9241
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	9.2	0.9186
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Lus10028618 [exp]	9.3	0.8653
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	9.4	0.9313
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	13.3	0.8993
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035476 [exp]	13.6	0.8523

Compare expression of checked genes

Lus10025923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.