Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24840 465 / 2e-158 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 345 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 336 / 9e-109 ATSFH12 SEC14-like 12 (.1) AT2G21540 335 / 2e-108 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 335 / 2e-108 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 330 / 2e-106 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 332 / 4e-106 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G55690 327 / 2e-104 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75370 315 / 7e-100 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 306 / 1e-96 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038176 [exp] 927 / 0 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10011853 [exp] 707 / 0 AT3G24840 576 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022790 [exp] 681 / 0 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042303 [exp] 350 / 3e-114 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10023546 [exp] 345 / 2e-111 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 336 / 9e-108 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 337 / 1e-107 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 335 / 1e-106 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040432 [exp] 331 / 8e-106 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243000 [exp] 546 / 0 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G119700 [exp] 360 / 1e-117 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 359 / 1e-116 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 354 / 9e-115 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.001G471300 [exp] 340 / 2e-109 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.011G168300 [exp] 338 / 7e-109 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G032600 [exp] 338 / 1e-108 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 330 / 5e-106 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157600 [exp] 323 / 3e-103 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G230500 [exp] 324 / 4e-103 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10025924 pacid=23177453 polypeptide=Lus10025924 locus=Lus10025924.g ID=Lus10025924.BGIv1.0 annot-version=v1.0 ATGAAAGGAGAGTTAGCGTCGGCGTCGGCGTCGGCGTCGGCGTCTTTCTATCAAGAACATGGAAAGGCGAAAGCACTGGATCAGGAGACCTCTGAGGACG AGAAGCATCGAAGGACTGGAGTTAGATCTCTACGGAAAAAGGCGATGGGCGCTTCAACCAAACTCACGCATGCAATGAGTGCTTCTACCAAACTCACGCA CAGTCTTAGGAAGCGTAGCAAGAGGGTGGCTGATTGCAGATATGCATCGATCTTAGTTAATGATGTAAGGGATGCTAAGGAAGAGGCAGCTGTTAATTCA TTTCGACATGCTTTGGTTACAAAGGACTTGCTACCACCACGGCACGATGATTACCACACTCTATTGAGGTTTCTGAAGGCAAGGAAATTTGACCTTGACG AAACTATCGTCATGTGGTCAGAAATGCTTAACTGGAGGAAAGATTACAGAGTGGATACCATTCAACAGGATTTTGTATATGAGGAATTTGAAGAGGTACG GAGGTATTATCCTCATGGTTACCATGGGGTAGACAGAGAAGGTCGACCTGTATATATTGAAAGACTTGGAAAGATAGAGCCTAACAAGCTAATGAATGTT ACTACAGTTGATCGATTTTTGAAGTACCACGTTCAGGGCTTTGAGAGAGCATTTTCTGAGAAATTCCCTGCATGCTCCATTGCAGCTAAGAGGCACGTAG ATTGCACAATAACCGTACTCGATGCACATGGATTGAACTGGATGAGCTTCGGCAAGGTTGCACATGACCTTGTAATGCGCATGCAAAAAGTTGACGGGGA CAACTATCCTGAGGTTCTAGGCACCAAGTTCCAAAGTAAGTTGTTGGAGGTCATCGACTCAAGCCAATTGCCAGATTTTCTTGGTGGTACCTGCTGCTGT GCTAACGAAGGCGGTTGTCTCAGGACGGAGAAGGGACCATGGATGGATCCAGACATAATGAAACTGGTACAGGCTGGAGATGCATTATACCTAGCAAAAC TGAGATCATATTCCGATGAAGAAGACATTAAGTTGTTTGCCTCAAAGACACCGAGAAGTGAAAATACAACTACTGATGCGAGTTCAGATTTGAGGCCAAA CAGGGAGTTTATTGAACAGGTGCCACCACAACCTATCCAGCAAGTACTTCCTAACCAACTGAAAGTACCTGCTGATCGATCTATATGTGGCAATGCTTCA ACTGTTCAACTTACCAACAAAACAAATAACACTACTGAGAATGTTGTCCTTGAAAATCCTGGTGGAAGACGTTTGGTTGTTCGCATCATGGTCAAAATAT TAGCATGGGTGTACGTTATACTCCCAAGGGTGCTACAACATGCAAGAAGAGAATTGCCAAGCCGGTCTGAGCCACTATTACCAGATTCAAGCTTACACGA GCAGCATGTATCATCACAGCAAACTGAAGGAGATAGGTTGCTGCATCCATGCTGGCAGAGGCTGCAGCATTTGGAAAAAATGGTCAATGAGCTGGTTAAC AAACCCACAAGTATTCCTCCTGAAAAAGAGGGCATGCTTCTTGATTCCTTGAGCCGTATTAGGGGTATAGAATATGATCTCCAGAAGACAAAGAAGGCTC TGTTGGCAACAGCATCGAAACAAGTGGAGCTTGCCGAGTACCCAACTCTTGTTGGCCAAGACATTCCAAACCCTACCCTGAAGGATGATGGGAAATTCAT GTAA
AA sequence Show only first row Show all	>Lus10025924 pacid=23177453 polypeptide=Lus10025924 locus=Lus10025924.g ID=Lus10025924.BGIv1.0 annot-version=v1.0 MKGELASASASASASFYQEHGKAKALDQETSEDEKHRRTGVRSLRKKAMGASTKLTHAMSASTKLTHSLRKRSKRVADCRYASILVNDVRDAKEEAAVNS FRHALVTKDLLPPRHDDYHTLLRFLKARKFDLDETIVMWSEMLNWRKDYRVDTIQQDFVYEEFEEVRRYYPHGYHGVDREGRPVYIERLGKIEPNKLMNV TTVDRFLKYHVQGFERAFSEKFPACSIAAKRHVDCTITVLDAHGLNWMSFGKVAHDLVMRMQKVDGDNYPEVLGTKFQSKLLEVIDSSQLPDFLGGTCCC ANEGGCLRTEKGPWMDPDIMKLVQAGDALYLAKLRSYSDEEDIKLFASKTPRSENTTTDASSDLRPNREFIEQVPPQPIQQVLPNQLKVPADRSICGNAS TVQLTNKTNNTTENVVLENPGGRRLVVRIMVKILAWVYVILPRVLQHARRELPSRSEPLLPDSSLHEQHVSSQQTEGDRLLHPCWQRLQHLEKMVNELVN KPTSIPPEKEGMLLDSLSRIRGIEYDLQKTKKALLATASKQVELAEYPTLVGQDIPNPTLKDDGKFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	0	1
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	1.4	0.9175
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	1.7	0.8894
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	2.2	0.8785
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	3.2	0.8947
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	3.5	0.8502
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	4.2	0.8393
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	4.2	0.8673
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	4.9	0.8871
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	5.1	0.8498
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	8.9	0.8586

Compare expression of checked genes

Lus10025924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.