Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13150 375 / 9e-130 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038175 [exp] 459 / 5e-164 AT4G13150 203 / 8e-64 unknown protein Lus10038173 [exp] 395 / 1e-139 AT4G13150 332 / 2e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242800 [exp] 449 / 1e-158 AT4G13150 375 / 8e-130 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10025925 pacid=23177663 polypeptide=Lus10025925 locus=Lus10025925.g ID=Lus10025925.BGIv1.0 annot-version=v1.0 ATGGCTCTAGCGGCGGCCATTCTGGGACATGGCCACTCCTTAAACCTTCCAAGGGTCTCGCCCAAAACCTCCCTTCATCCACGATATTTGAAGCATCCCT CTTGCTCTCTCACTATTCCTCGGAGAAGGTTCCCTCTAATTGCCAACATTGCAGCTTGTCCTGCTCTTAGGATCAGAAGCCTTTCCCAAAAGGCTTCAGG GAATGATGAAGCTTACAAAGGCTATGATGGTGAAAATACGGCTAAAAATGAGATACTTGAGAATCAAAGAAATGAATCCAGTGATACAGGGAATACGTTT CTGATTATATTAATTGCCGCTCTTGGTGTGGCTGTGATTCTTACGGTCATATCAGCTGGCCTCGGGCAGCCTAGTGCTGGATTGTTTTCTGGTGTCCAAT GTCTGCCTGAAACTTCATTAGCTGCAGTACCTGTGGGGTATAGTTTCAAGGCTTTTGGTTATCGCATTATACTTCCCGAATATGCCCCAGGGTGGCTCTA CTTTTGGTTGCTCATGGCTGCTGGTTTTGGCCTTTTCATCAGTGAAGAAGCTTTAAACATTTGGGTCGGCATATCTCTGTCACGGATGCTGTCTTTTGAT GGAACGTGGCAGTCTTTCGCTGCATCCTTCTCCAAGAATGCTCCATACATAATGTCTACGGTTATGTGGGTATACTTGGGAGTATGCATCAGTGATATGA TACCCTTCTACCTCGGAAAACTCTTTAAGCACAGCGGAGCATCAAATGATATCTGTGCAAAGCTAGGCATTAGTGAAGAGAAGGTCTTGAGCATCACACG CATTGTACGGAGTTACGGCAACCTTGCAGGCTTTGTTGAGCGTTTTTCACTGGGAGTGAGAAATCCAACAGCTTTCCTTGCGGGCTCACTGGGCATATCC CCCGAGTGCTTCTTTGCTGGAGTTTGCTGCGGTGGTTTGATCACACTTTCCATGCAGTTAGCCATTGGATTCCTATTGAGGGAGCGTCCCATGTTTGCTC TGGCCACGGTTGCTAGTGTAGTGGGAATCTGGACTGTCTTCCCCTACGCCATGGCTGCTTCCACTGCACTGTTCCTCTATCTCCGACGTCGTTATTCCTC GTAG
AA sequence Show only first row Show all	>Lus10025925 pacid=23177663 polypeptide=Lus10025925 locus=Lus10025925.g ID=Lus10025925.BGIv1.0 annot-version=v1.0 MALAAAILGHGHSLNLPRVSPKTSLHPRYLKHPSCSLTIPRRRFPLIANIAACPALRIRSLSQKASGNDEAYKGYDGENTAKNEILENQRNESSDTGNTF LIILIAALGVAVILTVISAGLGQPSAGLFSGVQCLPETSLAAVPVGYSFKAFGYRIILPEYAPGWLYFWLLMAAGFGLFISEEALNIWVGISLSRMLSFD GTWQSFAASFSKNAPYIMSTVMWVYLGVCISDMIPFYLGKLFKHSGASNDICAKLGISEEKVLSITRIVRSYGNLAGFVERFSLGVRNPTAFLAGSLGIS PECFFAGVCCGGLITLSMQLAIGFLLRERPMFALATVASVVGIWTVFPYAMAASTALFLYLRRRYSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13150			unknown protein		Lus10025925 [exp]	0	1
					Lus10032375 [exp]	1.0	0.9547
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10023102 [exp]	2.0	0.9137
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	3.5	0.8877
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	6.3	0.9042
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	8.4	0.8874
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	10.4	0.9057
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	10.7	0.8947
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	11.2	0.8859
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	15.5	0.8406
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	18.5	0.8866

Compare expression of checked genes

Lus10025925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.