Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48740 1058 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 390 / 4e-121 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 376 / 3e-116 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 369 / 3e-113 Leucine-rich repeat protein kinase family protein (.1.2.3) AT3G21340 363 / 2e-111 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 361 / 8e-111 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 361 / 1e-110 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 359 / 5e-110 Leucine-rich repeat protein kinase family protein (.1) AT2G19190 358 / 9e-110 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT2G28990 355 / 2e-108 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038172 [exp] 1460 / 0 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 1093 / 0 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 371 / 9e-114 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 358 / 4e-109 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 356 / 1e-108 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 292 / 1e-84 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 291 / 3e-84 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 289 / 1e-83 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 290 / 2e-82 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242700 [exp] 1259 / 0 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 389 / 9e-121 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 383 / 1e-118 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 333 / 5e-100 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 330 / 5e-99 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 330 / 9e-99 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.016G084900 [exp] 295 / 7e-86 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 291 / 1e-84 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 285 / 3e-82 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094200 [exp] 268 / 5e-80 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10025926 pacid=23177461 polypeptide=Lus10025926 locus=Lus10025926.g ID=Lus10025926.BGIv1.0 annot-version=v1.0 ATGGCTCCCTATTACTGCTTTTTCCTCTCTTTTGGACTGCTCTTCTCTCTAACCTCCTCTAATCCTGATGGATTCCTCAGCTTGACCTGCGGCGGGATGA CCGATTACGTGGATCCAGCAACCTCAATCTCATGGATATCCGACGGCAATTTCATAAACAGAGGAAACACCACAGCTGTGGCGGACCTCCCACTCCGTTT CTTCCCCAATTCCGCCGGCGGCGGCCGGAACTGTTACAGCATTCCTCTGACTAACATGTCATCCTCGTTGCTTCTCGTCAGAGCTAAATTCGTCTACGGG AATTACGACGGGGTTGGGAACCCGCCGACATTTTCTGTTTCGCTGGGAACTGCAATCACTTCTTCTGTAAACCTTACTGCTGCTGATCCCTGGATCGAAG AGTTGGTTTGGCCTACTGTTGGTGGTGGTGGTGGTAAGGACGTTGTTACTGTTTCTTTGTGCTTGATCCCCATTCCTGGCGGTGGAGCTCCGGTCATTTC ATCGATCGAAGTCCGGCCTCTTCCGCCGGGAGCTTACCGTGGCGGTGGCGGTGGCGTGGGAGATTGGGGCAATAAGTTGCTCCGGAAGTCGTATCGGATC AATAGTGGATACACCAACGGATCCCTGAGATACCCTGCGGATCCATACGATAGGATATGGGATGCTGACGAGAAATACAACCCTTTCCACATCTCATCAG CATTCAACGTCTACCTAGCCTTGAACACATCAACCGTCCCAGAGAATCCACCCATTTCGATTCTTCAAACTGCTCGAGTTCTGGCGAGGAGCGATGTCTT AACCTACAATCTCCCACTTGGTGTCCTTGGGGACTACTACATTCTACTCTATTTTGCAGGGATACTCCCTGTCTCACCTGCATTTGATGTTTTGGTCAAT GGAGACATGGTCGAGCTCGACTATACGGTTCAAATGGGTGACGGGAGTGTTCTATACTTGACGCGCAAGGCCATCAATAACCTCAATCTCACGCTCAGGA GCACCAGGTTTTATCCACAGGTCAATGGGATTGAGGTTTATCAGATTGTTGACATTCCCTTGGAAGCTTCCTCCACAACAGTTTCAGCACTTCAAGTTAT CCAGCAGGCTACTGGGTTGGATCTGGGATGGGAAGATGACCCTTGTTCTCCAACACAATGGGCTCATGTTGGATGTGAAGGAAGCCTAGTTACATCTTTG GAGCTTTCAGATGTCAATCTGAGGTCAATCAATCCTACTTTTGGAGACTTGCTGGATCTCAAAACTCTGGATTTACACAACACTTCACTTGATGGAGAGA TAAAGAACTTGGGAAGTCTGCAACGTCTTGAGAAGCTGAACCTGAGCTTCAATCATCTAACGTCCTTCGGAGGTGAACTGGATAAATTGGTTAGCCTTCA AGTTCTGGACCTGCAGAATAACAGCTTAGAGGGAGTGGTTCCGCAGAGCTTGGGAGAGATGGAGAACCTTCACCTCCTGAACCTGGAAAATAACAAGCTG CAAGGAACCCTTCCAGAGTCTTTGAACAGAGAAAGTTTGGAAGTCAGGGCATCAGGGAATCTGTGTGTTTCTTTCTCCGCAACAACCTGCAATGAAGCCT CCTCGGATCCTTCCATCGAGACGCCACAAGTTACAATCTTAGCCAAGAATAAGCCGGACAACAAAAACCATGTAGCAGTCATACTTGGGGCAGCTGGAGG TTCCTTGCTTGCTCTCATCGTCTGTTCGATTGCACTACTCTTGTACAGTAGGAAAGAGAGAACTGAAGTTCCTTTTGCACAAAGTCAAGGAACAGAAATG AAGACCTGGAATTCAGCCAGAGTCTTTTCATACAAAGAAATTAAGACAGCAACAAACAGTTTTAAGGAAGTCATTGGCCGCGGCAGCTTTGGTTCAGTGT ACCTTGGGAAGCTTCCTGATGGGAAACAGGTGGCTGTCAAAGTCAGGTTTGATAGAAGTCAACTCGGAGCTGATTCTTTCATCAATGAGGTGCATCTCCT GTCACGAATTCGTCATCAGAATCTAGTGTGTCTAGAAGGATTCTGTTATGAATCAAAGCAGCAGATACTAGTTTACGAGTATCTATCTGGCGGATCTCTG GCTGACCACCTTTATGGATCAAAGAGTAAAAAAATATCACTAAGCTGGGTTCGCAAGCTGAAGATTGCAGTTGATGCTGCAAAAGGATTGGAATATCTGC ACAATGGAAGCGAGCCACGAATCATCCACCGTGACGTGAAGTGCAGCAACATACTGCTGGACAAAGACATGAATGCCAGGGTGTGTGACTTTGGTCTTTC CAAGCAACTTGTGCAGTCTGATGCAAGTCATGTCACTACTATGGTCAAGGGCACTGCAGGCTACTTGGATCCCGAGTACTACTCTACCCAACAGCTGACG GAGAAAAGTGACATATACAGCTTTGGAGTAGTTCTTCTGGAATTGATTTGCGGGCGAGAGCCATTGCGCCACACTGGAACTCCAGACTCTTTCAATCTGG TTTTATGGGCTAAGCCATACTTACAAGCTGGAGCGTTAGAGATAGTGGATGAGAATATGAAGGAGACTTTCGACGTGGAGAGTATGAGAAAGGCAGCGAT GGTTGCTGTAAGGTGTGTAGACAGAGATGCATCAGAGAGACCAAATATTGCTCAGGTCTTGGCTGAGCTCAAAAAAGCCTACAGCATTCAGCTCTCTTAT CTGGCTTCTTTTGATTTGTGA
AA sequence Show only first row Show all	>Lus10025926 pacid=23177461 polypeptide=Lus10025926 locus=Lus10025926.g ID=Lus10025926.BGIv1.0 annot-version=v1.0 MAPYYCFFLSFGLLFSLTSSNPDGFLSLTCGGMTDYVDPATSISWISDGNFINRGNTTAVADLPLRFFPNSAGGGRNCYSIPLTNMSSSLLLVRAKFVYG NYDGVGNPPTFSVSLGTAITSSVNLTAADPWIEELVWPTVGGGGGKDVVTVSLCLIPIPGGGAPVISSIEVRPLPPGAYRGGGGGVGDWGNKLLRKSYRI NSGYTNGSLRYPADPYDRIWDADEKYNPFHISSAFNVYLALNTSTVPENPPISILQTARVLARSDVLTYNLPLGVLGDYYILLYFAGILPVSPAFDVLVN GDMVELDYTVQMGDGSVLYLTRKAINNLNLTLRSTRFYPQVNGIEVYQIVDIPLEASSTTVSALQVIQQATGLDLGWEDDPCSPTQWAHVGCEGSLVTSL ELSDVNLRSINPTFGDLLDLKTLDLHNTSLDGEIKNLGSLQRLEKLNLSFNHLTSFGGELDKLVSLQVLDLQNNSLEGVVPQSLGEMENLHLLNLENNKL QGTLPESLNRESLEVRASGNLCVSFSATTCNEASSDPSIETPQVTILAKNKPDNKNHVAVILGAAGGSLLALIVCSIALLLYSRKERTEVPFAQSQGTEM KTWNSARVFSYKEIKTATNSFKEVIGRGSFGSVYLGKLPDGKQVAVKVRFDRSQLGADSFINEVHLLSRIRHQNLVCLEGFCYESKQQILVYEYLSGGSL ADHLYGSKSKKISLSWVRKLKIAVDAAKGLEYLHNGSEPRIIHRDVKCSNILLDKDMNARVCDFGLSKQLVQSDASHVTTMVKGTAGYLDPEYYSTQQLT EKSDIYSFGVVLLELICGREPLRHTGTPDSFNLVLWAKPYLQAGALEIVDENMKETFDVESMRKAAMVAVRCVDRDASERPNIAQVLAELKKAYSIQLSY LASFDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	1.0	0.9810
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	2.4	0.9368
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	2.8	0.9333
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	2.8	0.9443
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	5.0	0.9211
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	7.5	0.9167
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	8.5	0.9132
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	8.9	0.9152
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	10.1	0.9199
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	12.8	0.9087

Compare expression of checked genes

Lus10025926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.