Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06980 42 / 5e-05 unknown protein AT2G30230 42 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038171 [exp] 306 / 1e-107 AT1G06980 46 / 2e-06 unknown protein Lus10020386 [exp] 70 / 3e-14 AT1G06980 44 / 3e-05 unknown protein Lus10026092 [exp] 69 / 3e-14 ND 42 / 5e-05 Lus10009561 [exp] 68 / 7e-14 AT1G06980 44 / 1e-05 unknown protein Lus10002327 [exp] 66 / 3e-13 AT1G29195 47 / 1e-06 unknown protein Lus10006211 [exp] 46 / 4e-06 AT1G06980 39 / 9e-04 unknown protein Lus10042244 [exp] 41 / 0.0002 AT1G06980 173 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242400 [exp] 115 / 5e-31 AT1G06980 45 / 9e-06 unknown protein Potri.003G179600 [exp] 82 / 3e-19 ND / Potri.002G217100 [exp] 66 / 4e-13 ND / Potri.001G048400 [exp] 63 / 3e-12 ND / Potri.010G046225 [exp] 52 / 4e-08 ND / Potri.008G186700 [exp] 48 / 1e-06 AT5G50090 41 / 1e-04 unknown protein Potri.014G170000 [exp] 47 / 1e-06 ND / Potri.019G123900 [exp] 45 / 4e-06 AT2G30230 159 / 3e-50 unknown protein Potri.013G153100 [exp] 45 / 7e-06 AT2G30230 189 / 5e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025927 pacid=23177617 polypeptide=Lus10025927 locus=Lus10025927.g ID=Lus10025927.BGIv1.0 annot-version=v1.0 ATGCAGAGTCTTGAAACCATCACTAGCAACAGCAGGAAGACGACGACGACGACCATGAAGAAAGCTAGAACCTTGGAGGAGGAATCAGGAATCCTGAAAC TCGTACATCCAGGCCGCCACGTCGAAATCCACAGGCAACCTATTTTGGCATCCCAAGTTATGATCCAGAATCCTAGACACTCTGTCGCTCTGCCTCAAGT CTTCCAGAAACCATGGCTCGTAGTTCGACCTGACGCTCTGCTTCATCCTGGACAAGTGTTCCTCCTTGTCCCGAACTCTAGCCTCTACCAATTGCTCAAA TCTCACAGGGAAACCCGCAATTTCCGGCCTCATCATCATCATCATCATCATGATCGGCTTGTTGGCAATGACGGCAGTAATGTTAATGGGTCGTTTGAAG AAGAAATTAGGCTTAGCTCTTCTTTCTATAACAGGAATGCCCAGTTCTGCACTGGGAGTGTTCATGCGAACTGTAATGATGGATTGGAGAGGGAAGATCA TGTTAGTCAGAATCAGCAGGTTGCTGACAAGCTGAAATCTTGTTTGAGATATCCTGACAGTCCTCGGAGGTTGCTTGACCTTAGAGTCAACTTTGCATTT GCTTGTTCAAAAGGATAG
AA sequence Show only first row Show all	>Lus10025927 pacid=23177617 polypeptide=Lus10025927 locus=Lus10025927.g ID=Lus10025927.BGIv1.0 annot-version=v1.0 MQSLETITSNSRKTTTTTMKKARTLEEESGILKLVHPGRHVEIHRQPILASQVMIQNPRHSVALPQVFQKPWLVVRPDALLHPGQVFLLVPNSSLYQLLK SHRETRNFRPHHHHHHHDRLVGNDGSNVNGSFEEEIRLSSSFYNRNAQFCTGSVHANCNDGLEREDHVSQNQQVADKLKSCLRYPDSPRRLLDLRVNFAF ACSKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06980			unknown protein		Lus10025927 [exp]	0	1
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10022725 [exp]	5.7	0.8504
					Lus10030114 [exp]	6.6	0.8701
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10016646 [exp]	9.3	0.8514
AT5G02640			unknown protein		Lus10009066 [exp]	10.9	0.8913
AT1G61667			Protein of unknown function, D...		Lus10007617 [exp]	13.5	0.8111
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	13.6	0.8964
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	13.9	0.8876
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	19.4	0.8902
					Lus10031697 [exp]	21.8	0.8102
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10014188 [exp]	27.4	0.7787

Compare expression of checked genes

Lus10025927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.