Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48800 846 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G03010 491 / 3e-167 Phototropic-responsive NPH3 family protein (.1) AT3G08570 468 / 2e-158 Phototropic-responsive NPH3 family protein (.1) AT2G47860 455 / 2e-153 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08660 436 / 2e-146 Phototropic-responsive NPH3 family protein (.1) AT5G67385 419 / 8e-140 Phototropic-responsive NPH3 family protein (.1) AT1G30440 378 / 5e-123 Phototropic-responsive NPH3 family protein (.1) AT2G30520 369 / 3e-120 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 360 / 5e-117 Phototropic-responsive NPH3 family protein (.1) AT5G13600 349 / 1e-112 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038169 [exp] 601 / 0 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10005943 [exp] 467 / 8e-158 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 392 / 2e-128 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 390 / 8e-128 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 378 / 4e-123 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 375 / 3e-122 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 374 / 1e-121 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 372 / 1e-120 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10029102 [exp] 367 / 7e-120 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242300 [exp] 941 / 0 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 541 / 0 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 512 / 9e-176 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 511 / 4e-175 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 475 / 2e-161 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 415 / 1e-137 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 404 / 2e-133 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 393 / 1e-128 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 392 / 2e-128 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 382 / 4e-125 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10025928 pacid=23177460 polypeptide=Lus10025928 locus=Lus10025928.g ID=Lus10025928.BGIv1.0 annot-version=v1.0 ATGCGCCAAAGAAAGAGGATTTTCAGAGATGTCCCTAGTGACTTCACCATAGAAGTTGGCGGAAGCACATTTGCATTGCACAAGTTCCCGATAGTGTCTC GGAGTGGGAGGATCAGGAAGTTGGTGGCAGAGCACAGAGATTCAGACATCGCAAGGGTGGAGCTTTTGAATCTACCAGGAGGGGCAGAGACATTCGAGCT GGCTGCAAAATTCTGTTACGGCATCAACTTCGAGATAACATCTTCAAACGTCGCCCAGCTCTGCTGTGTCTCAGACTACCTGGAAATGACGGAGGACTAC TCACACGACAACCTCGGATCTCGAGCTGAAGAGTATCTAGACAGTGTCGTCTGCAAAAACCTCGAGCTCTGCGTTGAAATTCTGCAGCAATGTGAGAGCC TCCTCCCGCTGGCAGACGAGCTAAAAATAGTCAGCCGTTGCATCGACTCGATAGCTTCGAAAGCCTGCGCTGAACAAATCGCGTCCAGCTTCTCGAGACT GGAGTACAGTAGCTCGGGAAGACTCCACATGAACAAGCAAGCTAAATGTGAAGGGGATTGGTGGATTGAGGATCTCTCTGTGCTCAGGATTGATCTTTAC CAAAGGGTGATCACGGCCATGAAATGTCGAGGGGTTCGCCCCGAGAGCATTGGGGCATCACTTGTGAGCTATGCTCAGAAGGAGCTGACGGCTAAGAAAT CTAGCCAGACTAAATTGGCTGATCACATGGTCTCGACGACAAGCCAAGAGATCAGGCTTGTCGTTGAGACCATCGTTAGCTTGTTGCCTGTAGAGAAACT TGCTGTCCCGATCAGTTTCCTGTTTGGTCTTCTGAGGAGTGCTGTGATGCTTGATTGTAGTGTTTCTTGTAGGCTTGACTTGGAGAGGCGAATCGGGTCG CAGCTTGACATTGCAACGCTTGACGATCTCCTGATTCCGTCGTTCAGGCATTCTGCTGACACTTTGTTTGATGTTGACACGGTTCATAGGATCTTGGTTA ACTTCTCGCAGCAAGATGACAGCGAGGATGATGAGATGGATGCCGATGATGATGGTTCCGTGTTTGAGTCTGATCATAGCCCGCATTCGCCTTCTCAGAC TGCGCTGTTTAAGGTGTCCAAGTTGGTGGATAATTATCTCGCTGAAATCGCTCCAGATGCTAACCTCAAACTCTCCAAGTTCGTTGTCGTTGCGGAGGCA TTGCCTTCTCATGCCCGTACCCTTCATGATGGATTGTATCGCGCTATCGACATATATCTCAAAGCGCATCAAGGATTACCTGAGACAGACAGGAAGAGGG TATGCAAGCTGATAGACTTCCAGAAGCTTTCTCAGGAAGCCGGGGCTCATGCTGCACAGAACGAAAGACTTCCACTTCAGTCAATAGTACAAGTACTTTA TTTTGAACAGGTCAGGCTTAGAAATGCACTATGCAGCTCCTACGGTGGTGAACATATCGATCCGGATCATAAGCCAATGATGCAACACCACCAGTCATGG AGGGCTAGCAGTGGTGCATTCAGCGCGGCCATGTCTCCCCGAGACAACTACGCTTCCCTGAGGCGAGAAAACCGAGAGCTGAAGCTTGAGCTGGCTCGGA TGAGGATGAGACTTAACGATCTGGAGAAGGATCACGTTTGTATGAAGAGGGATATGCAGAAGTCCGGTTCTCGCAAGTTCATGACTTCTTTCTCTAAGAA AATAGGTAAGCTGAGCTTCTTTGGTCATAGCTACTCGAGGGGATCTAGCTCACCTTCAAAACAGTCTCAGAGAACTGACTCTAAGGTGATTGAGAGAACA TGTGCAAGTACTGACTAG
AA sequence Show only first row Show all	>Lus10025928 pacid=23177460 polypeptide=Lus10025928 locus=Lus10025928.g ID=Lus10025928.BGIv1.0 annot-version=v1.0 MRQRKRIFRDVPSDFTIEVGGSTFALHKFPIVSRSGRIRKLVAEHRDSDIARVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLCCVSDYLEMTEDY SHDNLGSRAEEYLDSVVCKNLELCVEILQQCESLLPLADELKIVSRCIDSIASKACAEQIASSFSRLEYSSSGRLHMNKQAKCEGDWWIEDLSVLRIDLY QRVITAMKCRGVRPESIGASLVSYAQKELTAKKSSQTKLADHMVSTTSQEIRLVVETIVSLLPVEKLAVPISFLFGLLRSAVMLDCSVSCRLDLERRIGS QLDIATLDDLLIPSFRHSADTLFDVDTVHRILVNFSQQDDSEDDEMDADDDGSVFESDHSPHSPSQTALFKVSKLVDNYLAEIAPDANLKLSKFVVVAEA LPSHARTLHDGLYRAIDIYLKAHQGLPETDRKRVCKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQVRLRNALCSSYGGEHIDPDHKPMMQHHQSW RASSGAFSAAMSPRDNYASLRRENRELKLELARMRMRLNDLEKDHVCMKRDMQKSGSRKFMTSFSKKIGKLSFFGHSYSRGSSSPSKQSQRTDSKVIERT CASTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	0	1
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	2.8	0.9083
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	3.0	0.9350
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	3.7	0.9149
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	4.9	0.9043
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	4.9	0.8998
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	7.0	0.9039
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	9.5	0.9068
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	10.1	0.8884
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	11.6	0.8776
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	12.5	0.8935

Compare expression of checked genes

Lus10025928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.