Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24820 162 / 2e-50 BSD domain-containing protein (.1) AT1G69030 105 / 4e-27 BSD domain-containing protein (.1) AT1G26300 102 / 4e-26 BSD domain-containing protein (.1.2) AT5G65910 49 / 6e-07 BSD domain-containing protein (.1) AT3G49800 44 / 4e-05 BSD domain-containing protein (.1) AT1G10720 42 / 0.0002 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038170 [exp] 338 / 2e-120 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10036831 [exp] 110 / 4e-29 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10019194 [exp] 106 / 2e-27 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2) Lus10011556 [exp] 48 / 2e-06 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 48 / 2e-06 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242200 [exp] 182 / 2e-58 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1) Potri.008G111900 [exp] 111 / 2e-29 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.010G137900 [exp] 100 / 2e-25 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.014G008400 [exp] 49 / 8e-07 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 46 / 8e-06 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 42 / 0.0002 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10025929 pacid=23177458 polypeptide=Lus10025929 locus=Lus10025929.g ID=Lus10025929.BGIv1.0 annot-version=v1.0 ATGAATTTTTTTACAGCGGTAAACGGCGCTCCTCCACCAATCGCGCCGGCGAAAGTAAAGTTGGCCAGAACAGAACCCCTGACTGCGGTTGCTCAGCTCG AATCCATTCCAGAATTCATGAACTGGAAATTATGGTTCGGAGCTCGCAGCTCAAGCTTTAACCCAACGCACCATCAATCGACAGACGAAGATATTCTTGG ACTTACCCAACAATTGATAGATCGCGTCAAGTCCTTCAATCTTGATACCTTCAAGAACTTCCCACTCCATGATGACAGAAATGCAGAAGCTACCTTCGGC GACGAAACTGAAGGAATCGAAGCAGCTAACATTCATAGAGATCTCTCTGAATGGCAGGAAAGACATGCTACTCTCGCTCTTTCCAAAGTCAAGGAACTTT CACAGCTTAGATTCAAGTTATGCCCTCGCCACTTGAAAGAACGAGACTTTTGGAGGATCTATTTTACACTTGTCAAGACCGACATAGTCGAGTATGAGCT ACGGGCCATCCAATTAGCTAAAGTTCAGAAGATGGCAACAGAGACTAGAAAATCTTCACAGGCCATCCCAGTCGAAGTTGAATTGGCAGAGACGGTGAAT TCAACGAGCATACAACCGCCAACTCCATGA
AA sequence Show only first row Show all	>Lus10025929 pacid=23177458 polypeptide=Lus10025929 locus=Lus10025929.g ID=Lus10025929.BGIv1.0 annot-version=v1.0 MNFFTAVNGAPPPIAPAKVKLARTEPLTAVAQLESIPEFMNWKLWFGARSSSFNPTHHQSTDEDILGLTQQLIDRVKSFNLDTFKNFPLHDDRNAEATFG DETEGIEAANIHRDLSEWQERHATLALSKVKELSQLRFKLCPRHLKERDFWRIYFTLVKTDIVEYELRAIQLAKVQKMATETRKSSQAIPVEVELAETVN STSIQPPTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	0	1
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10010265 [exp]	5.1	0.6466
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	6.9	0.6950
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	7.0	0.6961
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	18.8	0.6747
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	20.4	0.6905
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	23.7	0.6640
AT4G37810			unknown protein		Lus10011570 [exp]	24.0	0.6845
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	37.8	0.6113
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	37.9	0.6494
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	41.9	0.6475

Compare expression of checked genes

Lus10025929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.