Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24800 275 / 5e-89 PRT1 proteolysis 1 (.1) AT1G18660 55 / 6e-08 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G42030 50 / 2e-06 RING/U-box superfamily protein (.1) AT3G58030 50 / 2e-06 RING/U-box superfamily protein (.1.2.3.4) AT1G74990 45 / 8e-06 RING/U-box superfamily protein (.1) AT4G03510 44 / 7e-05 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT1G19310 44 / 0.0001 RING/U-box superfamily protein (.1) AT1G02860 42 / 0.0004 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G27470 42 / 0.0004 ATRMA3 RING membrane-anchor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038169 [exp] 654 / 0 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015722 [exp] 53 / 3e-07 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 53 / 4e-07 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10010791 [exp] 46 / 3e-05 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 45 / 3e-05 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10011184 [exp] 45 / 4e-05 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10021063 [exp] 45 / 7e-05 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 45 / 8e-05 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 45 / 0.0001 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241900 [exp] 295 / 6e-96 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.003G178700 [exp] 256 / 9e-81 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.001G049300 [exp] 172 / 3e-50 AT3G24800 199 / 7e-61 proteolysis 1 (.1) Potri.012G068100 [exp] 53 / 2e-07 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.014G040400 [exp] 45 / 5e-05 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 44 / 6e-05 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.013G132300 [exp] 44 / 7e-05 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.016G058300 [exp] 45 / 9e-05 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.007G031600 [exp] 44 / 0.0001 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.006G193600 [exp] 44 / 0.0002 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type
Representative CDS sequence Show only first row Show all	>Lus10025930 pacid=23177511 polypeptide=Lus10025930 locus=Lus10025930.g ID=Lus10025930.BGIv1.0 annot-version=v1.0 ATGGATAATCCGCCAGCTGTCGCTTCCGTAGCGGCGACAGAAGCGGAGGAGGAGGAGGAGATTCTTGATGCTTTCACTTGTTGTATTTGCTTGGATCTTC TGTACAAGCCGGTAGTTCTTGCTTGTGGTCACATGGCCTGTTTCTGGTGTGTCCATCATTCCATGAGCTTCCGTGATCAGTCCCATTGTCCAATTTGCCG AAACCCTTATCGTCATTTTCCAGCCATTTGTGTCACTCTCCATTTCTTGCTCTTGAAGTTGTACCCCCTTGCCTCCAAGAGAAGAGAAGGACAAGTTCTT GAGGATGAAAAGGGAAAAATGGTTTTCTCACCACAGTATGATAGTACTTTGAGCACAATAGATGCTACAAAGGATCTTCCACAATCCTCGTCCTCTGGTG GCGATTCTAACATTGGATCGGGTGGGAATGAGGAGTCACCTACAAGTGAAGTGCAACCGAGAGCCTCTTCAACTGGCAATGACGAGTCGCTTTCAATAGA TGATGTGTGTTGCGTCGCATGCAAGGAACTGCTTTTTCTTCCTGTAGTCCTCAATTGTGGCCATGCTTTCTGTGAATGTTGCATTGTACGGCCAGTAAAT GGTGCAATCAAATGTCACGTGTGTCAGAGTTTGCACCCAAGAGGTACCCTGAAAGTTTGTTTGGAGTTTGATCGATTCTTGGAAGATAGATTTCCCAAGG AGTATAAATCCAGAAGAGAAACTGCTCAACCTGCTCATGTTATGACTGAGAGCCCAACTGCTGGTTTGGGGGAAAGTAGTAAAGAGGGCGTGGCTCCATT ACCAACAGAAGAACAATTACTGTTGAAGATTCATAAAGGAGTTGGATGTGATGCTTGTGGAATGTGTCCAATCATGGGGGAGAGATACAGATGCATAGAT TGTTTGGAGGCAATAGGGTTTGACCTGTGCGGAGAATGCTACAACTCGAGGTCAAAGCTTCCAGGTCGGTTTAATCAACAGCACACGGAAGAGCACAAGT TTGAGCATGTAGGACTGCTGCGGAGGGGGGTAATGATGATGGATGCACATATGATAAGACATTTGATAGGTAACGAGTCCAGTGTTGGTGGTGGTGGTGC CCCGACTGATACCCAAGAGCAAACTGCCAGAAACAATTTATTATATTCATCTGAGGAGGAGGAGGATGATGATGATGGTGATGATGAAGAGGAAGATGAG ATTGCTGCGGGCAATGAAAATGAAACCCAGTTATTTTGA
AA sequence Show only first row Show all	>Lus10025930 pacid=23177511 polypeptide=Lus10025930 locus=Lus10025930.g ID=Lus10025930.BGIv1.0 annot-version=v1.0 MDNPPAVASVAATEAEEEEEILDAFTCCICLDLLYKPVVLACGHMACFWCVHHSMSFRDQSHCPICRNPYRHFPAICVTLHFLLLKLYPLASKRREGQVL EDEKGKMVFSPQYDSTLSTIDATKDLPQSSSSGGDSNIGSGGNEESPTSEVQPRASSTGNDESLSIDDVCCVACKELLFLPVVLNCGHAFCECCIVRPVN GAIKCHVCQSLHPRGTLKVCLEFDRFLEDRFPKEYKSRRETAQPAHVMTESPTAGLGESSKEGVAPLPTEEQLLLKIHKGVGCDACGMCPIMGERYRCID CLEAIGFDLCGECYNSRSKLPGRFNQQHTEEHKFEHVGLLRRGVMMMDAHMIRHLIGNESSVGGGGAPTDTQEQTARNNLLYSSEEEEDDDDGDDEEEDE IAAGNENETQLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24800		PRT1	proteolysis 1 (.1)		Lus10025930 [exp]	0	1
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	24.1	0.7822
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	28.8	0.8044
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	37.0	0.7580
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	38.6	0.7638
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	61.4	0.7326
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	63.4	0.7547
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	66.6	0.7635
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	77.0	0.7507
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	88.4	0.7452
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Lus10027035 [exp]	89.3	0.7473

Compare expression of checked genes

Lus10025930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.