Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07090 308 / 1e-106 PPPDE putative thiol peptidase family protein (.1) AT2G25190 57 / 1e-09 PPPDE putative thiol peptidase family protein (.1) AT5G25170 56 / 3e-09 PPPDE putative thiol peptidase family protein (.1) AT4G17486 55 / 6e-09 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 55 / 2e-08 unknown protein AT5G47310 52 / 9e-08 PPPDE putative thiol peptidase family protein (.1) AT1G47740 51 / 2e-07 PPPDE putative thiol peptidase family protein (.1.2) AT4G25680 49 / 7e-07 PPPDE putative thiol peptidase family protein (.1) AT4G25660 46 / 7e-06 PPPDE putative thiol peptidase family protein (.1) AT1G80690 45 / 1e-05 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038168 [exp] 434 / 5e-156 AT3G07090 369 / 3e-130 PPPDE putative thiol peptidase family protein (.1) Lus10043293 [exp] 59 / 2e-10 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 59 / 5e-10 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10005341 [exp] 58 / 6e-10 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 57 / 1e-09 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10013657 [exp] 57 / 1e-09 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 54 / 8e-09 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 54 / 2e-08 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 53 / 3e-08 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241700 [exp] 318 / 7e-110 AT3G07090 366 / 1e-128 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 59 / 2e-10 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 59 / 2e-10 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.006G154400 [exp] 57 / 1e-09 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G070600 [exp] 56 / 2e-09 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 55 / 6e-09 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 54 / 1e-08 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 54 / 2e-08 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.009G113168 [exp] 52 / 8e-08 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 51 / 1e-07 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10025931 pacid=23177589 polypeptide=Lus10025931 locus=Lus10025931.g ID=Lus10025931.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCTTATTCCGAACTCCCCCAGGTTTTCGATCTGCATACTGGGGTGTCAGTGTACGGAAACGAATACTACTTTGGGGGAGGGATACAAAAGG ACACAGCCGGAAGGACTCCATATGGAACTCCCCTCAAAGTAATCGAGCTGGGAGTAACGCATGTGCCCCAGGATGTATTTGAAATGTATTTGGATGAGAT TAGCTCTCGATATACCGCTGAAACCTACAGTTTACTCAAACACAATTGTAACAATTTTAGCAACGAGGTTGCACAGTTTTTGGTCGGAGCATCCATTCCG GATTACATTCTTCAGCTTCCTAATGAAGTTTTGAGCAGTCCGATGGGCTCTCTCATATTGCCCATGATACAGAATCTAGAGGCGACAATGAGAGCTGGGG CTGTACCGCAAGTACCGCAATTCAGGCCTACTGTGGCCAGTCAGCAAACATTGGCTAGCAATGGAGCTGCATCATCCGGTAATTCAGGAGAGAAGAAGCC ATCTGTGAACTCCGTGCCTCCTGCTGTTGAGCCCACAAAAGAGAAGGAGAAAGCTTCGCCTTCTGCGGCTGATCCTCTTGGAGATGCAAGAAGCAAAGTG CAGGAAGAGATCGGTAGAGAATTTGCTGCGATCATGGCTCAGGGATCCCTGCGGGCAAGTGAGGCTGCTGCTCTTGCGACGAGGAGAGTGATGCAGAGAT ATGGGAGTCTGAATGTTGGATCGCCTCGTAGTTAA
AA sequence Show only first row Show all	>Lus10025931 pacid=23177589 polypeptide=Lus10025931 locus=Lus10025931.g ID=Lus10025931.BGIv1.0 annot-version=v1.0 MEEAYSELPQVFDLHTGVSVYGNEYYFGGGIQKDTAGRTPYGTPLKVIELGVTHVPQDVFEMYLDEISSRYTAETYSLLKHNCNNFSNEVAQFLVGASIP DYILQLPNEVLSSPMGSLILPMIQNLEATMRAGAVPQVPQFRPTVASQQTLASNGAASSGNSGEKKPSVNSVPPAVEPTKEKEKASPSAADPLGDARSKV QEEIGREFAAIMAQGSLRASEAAALATRRVMQRYGSLNVGSPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	1.0	0.9458
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	2.0	0.9334
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	2.4	0.9128
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	5.3	0.8371
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	6.6	0.8865
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	6.7	0.8735
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	7.1	0.8496
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	7.5	0.8555
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	7.5	0.8605
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	8.1	0.8685

Compare expression of checked genes

Lus10025931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.