Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48840 432 / 3e-146 ATPTS, PANC ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) AT1G79910 236 / 3e-70 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 167 / 9e-46 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 171 / 3e-44 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 132 / 2e-32 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 122 / 3e-30 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 120 / 7e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 105 / 1e-23 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 95 / 9e-20 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 89 / 5e-18 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038167 [exp] 590 / 0 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10035885 [exp] 476 / 2e-160 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 389 / 1e-126 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10011455 [exp] 316 / 1e-100 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 249 / 5e-75 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10034905 [exp] 202 / 3e-55 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 202 / 4e-55 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 123 / 1e-29 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 123 / 2e-29 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240800 [exp] 455 / 5e-155 AT5G48840 462 / 4e-165 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Potri.003G054500 [exp] 267 / 4e-80 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.001G181300 [exp] 267 / 7e-80 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 199 / 2e-54 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.003G054601 [exp] 186 / 5e-51 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 180 / 6e-49 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 125 / 3e-30 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 121 / 5e-30 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G117100 [exp] 122 / 6e-29 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 119 / 6e-28 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway CL0039 [flax] [poplar] HUP PF02569 [flax] [poplar] Pantoate_ligase Pantoate-beta-alanine ligase
Representative CDS sequence Show only first row Show all	>Lus10025932 pacid=23177500 polypeptide=Lus10025932 locus=Lus10025932.g ID=Lus10025932.BGIv1.0 annot-version=v1.0 ATGGAAGGTACAGAATCGCCGGTGATCGTCACCAACAAAGAAGAGATGAGGAAATGGTCACGAGCGATGAGATGCAGAGGGAAGACGATAGCCTTGGTTC CCACAATGGGTTACCTCCATCAGGGCCATCTATCTCTTGTCAAAGAAGCTCAATCCCTAGCCGATGTCATAGTGGTTTCAATCTACGTTAACCCAGGTCA ATTCGCTCCCACCGAGGATCTCTCCACTTACCCATCCGACTTCCAGGGCGATATCGAGAAGCTGCAGGGCTGCCGGGTGGACGCTGTTTTCCATCCCTAC GACCTTTACGATTACGGAAGCAGAAGAAGAAGAAGAGAGGGGGAATTTGAAGAAGGGGAAAAGGTTGGGGAGGGGATTCCGTCGTCGTGCGTGGAGGAAA TGGGAGCAGGGCACGAGACCTGGATAAGGGTTGAGAAATTGGAGAGAGGACTGTGCGGGAAGAGCCGCCCAGTTTTCTTTAGGGGAGTTGCGACTGTGGT CACTAAGCTGTTCAATATCGTGGAGCCTGATGTCGCCGTGTTTGGGAAGAAGGATTACCAGCAGTGGCGGATTATTCAGAGAATGGTTAGAGATCTGGAT TTTGGGATAAGGATAGTCGGATGCGAGATAATGCGAGAGGAGGATGGTTTGGCAATGAGTTCACGAAATGTTAAACTATCTGCAGAACACAGGGAAAAGG CACTATCCATAAGCAGGGCACTGTTTGAAGCTAAATTGTTGGCAGAGAAGGGGCAGACAAATTGCGGGGAGTTGCGAGACAATGTCGTCCAAGCAATAAC CGGAGCAGGAGGGAAGGTCGATTATGCGGAGATTGTGGATCAAGAGAGTTTGGAGGGAGTAGAAGTAGTGAAGAGCCCTGTTGTGTTCTGCATCGCTGCA TGGTTCGGTACTGTCAGATTGATTGATAACCTTGAGATCAGCGTTGGCAACAATGTTGTTAGCGAGGGACACGCCAGTCTCTGCATTATAATTTCATTCC ACTTTGGAAGAAGGACCCCAGAAATGGAATCAATGACGGAAGGAGGAACAAAAGAAGAAACAACAGAGAAGAAAAGACAAGGAAACGAGCAAGGAACCCC ACCATTTTCCCTATCTGCAAATCCCATTTTAATGTGGGGAAGGAGTCTGCAGTTGTGGAAAATGCTTAATAGTTTGACCAGATCAAAATTCTACACAAAA TGCAACTCATTGATAAAGGTGACCAAGGTGAGGCTGGAGGTGTCGAGGAAGAAGAAGAACGCTGTGGTCAAATACCTTAAGAATGATATCGCTGACCTTC TTAGGATTGGTTTTGATTCCAATGCTTATAGCAGGGCTCAAGGGCTAATACTTGAGCATAACTTGATCGCTGCTTACAAATTCGTGGAAGATTTTTGCGA CTGCATTGCAACCAATCTTGCAGTCTTAGACAAACAAAAGGAATGCCCTGAGGAATGCAGAGAAGCCATACAATCTTTGATGTATGCTGCAGCAAGATTG CCGGAGTTCCCAGAAGTGCGCGACCTCCGGTCCCTTTTTTCTCATAGATATGGAGATTCCCTTGAATTGTATATCAACAAGGAGTTCGAGGAGTTGTTGA ATCCAAGGCGTGCAACAAAGGAGATGAAGCTTCAGCTACTACGTGATGTGGCTCGAGAATTTTCCATCAACTGGGATTCCAAATTCATAGAGGATAAACT CTTGAGACCTCCCCATGCCTCCCAACAGAACCAGAATGCACATAATGTGGGATCTAACGATCTTGAAGATAGTAACCATAAAACAATTAAGAGCAAAGAT GAAGCAGAAGTTCCATCACCAAGAAGCAATAATGAAAAGCGTAGGCTTTACAGCAGCAGTGGGAGTGAGACAACCGATCTAGACAGTTCAGAACCTAGTC GAAGCTCAATGGGAACTATTAGTACTGCTTCAGAGGACGAAGTAAGCAACAGAAAGATCCCCTACAGGTTTCTACCACCACCCTATGTCAGAACAAGGCT AGACAAGCAGGATTTGAAGGACCAAGGTTTTCCGAAATCTTCTTCTCCTGATAATGCTGAATCAGGCAGTGAATTGCAACTAAATTCGAGATCGGTTGGA AGAAGGCAACAGATGAAGGCAGTGATGGGTGATGAGAAAGCATCTGATGGTGGAGAAGGGGAAGATGAAGAGCAGCATAGGAAGAAGAGAGCACGCTACG AAAGGACCCGCATGAAAAGAAAGTTGGAGCCTCTGTCATGGAGATCAAGAGATGAGAGCGGTAAGGGAGAATTGGAACATGCAGGAGGAGACCCAGGATC CGCGGCAAGTAGTTCTTCAGATAGTGGAACAGGAAGGCGTGGTAGTTCTCTATCGGCAGATTCGAAAGTGTCTGGACATGTGCATCCTAACCTGCCGGAA TATGATTCATTGTCTGCTAGGATTGCAGCTTTCATGGGCAAATGA
AA sequence Show only first row Show all	>Lus10025932 pacid=23177500 polypeptide=Lus10025932 locus=Lus10025932.g ID=Lus10025932.BGIv1.0 annot-version=v1.0 MEGTESPVIVTNKEEMRKWSRAMRCRGKTIALVPTMGYLHQGHLSLVKEAQSLADVIVVSIYVNPGQFAPTEDLSTYPSDFQGDIEKLQGCRVDAVFHPY DLYDYGSRRRRREGEFEEGEKVGEGIPSSCVEEMGAGHETWIRVEKLERGLCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQWRIIQRMVRDLD FGIRIVGCEIMREEDGLAMSSRNVKLSAEHREKALSISRALFEAKLLAEKGQTNCGELRDNVVQAITGAGGKVDYAEIVDQESLEGVEVVKSPVVFCIAA WFGTVRLIDNLEISVGNNVVSEGHASLCIIISFHFGRRTPEMESMTEGGTKEETTEKKRQGNEQGTPPFSLSANPILMWGRSLQLWKMLNSLTRSKFYTK CNSLIKVTKVRLEVSRKKKNAVVKYLKNDIADLLRIGFDSNAYSRAQGLILEHNLIAAYKFVEDFCDCIATNLAVLDKQKECPEECREAIQSLMYAAARL PEFPEVRDLRSLFSHRYGDSLELYINKEFEELLNPRRATKEMKLQLLRDVAREFSINWDSKFIEDKLLRPPHASQQNQNAHNVGSNDLEDSNHKTIKSKD EAEVPSPRSNNEKRRLYSSSGSETTDLDSSEPSRSSMGTISTASEDEVSNRKIPYRFLPPPYVRTRLDKQDLKDQGFPKSSSPDNAESGSELQLNSRSVG RRQQMKAVMGDEKASDGGEGEDEEQHRKKRARYERTRMKRKLEPLSWRSRDESGKGELEHAGGDPGSAASSSSDSGTGRRGSSLSADSKVSGHVHPNLPE YDSLSARIAAFMGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	0	1
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	1.4	0.8894
					Lus10017572 [exp]	2.8	0.8556
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	3.7	0.8382
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	4.9	0.8261
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	6.3	0.8432
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	6.9	0.8357
AT5G04980			DNAse I-like superfamily prote...		Lus10008934 [exp]	7.1	0.8284
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	7.3	0.8348
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	8.8	0.8447
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	9.7	0.8404

Compare expression of checked genes

Lus10025932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.