Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04750 363 / 4e-129 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 362 / 6e-129 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04760 362 / 7e-129 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 362 / 7e-128 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 303 / 1e-105 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 282 / 2e-97 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 280 / 4e-96 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G22360 154 / 9e-47 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT4G32150 150 / 2e-45 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G11150 150 / 2e-45 ATVAMP713 vesicle-associated membrane protein 713 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038166 [exp] 409 / 2e-147 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 387 / 2e-138 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 381 / 3e-136 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 350 / 5e-124 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 349 / 1e-123 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 348 / 2e-123 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 346 / 2e-122 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 342 / 5e-121 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 298 / 8e-104 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 371 / 1e-132 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 364 / 1e-129 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 358 / 2e-127 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 356 / 1e-126 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 355 / 6e-126 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 298 / 2e-103 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.010G239900 [exp] 276 / 9e-95 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 274 / 8e-94 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 150 / 3e-45 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.001G219200 [exp] 146 / 7e-44 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10025933 pacid=23177635 polypeptide=Lus10025933 locus=Lus10025933.g ID=Lus10025933.BGIv1.0 annot-version=v1.0 ATGGGGCAACAATCGCTGATCTACAGCTTCGTCTCCAGGGGGACGGTGATCCTGGCTGATTTTACCGAGTTCACCGGTAACTTCACTAGCATAGCCGCAC AGTGCCTCCAGAAACTTCCCCCTTCAAACAACAAGTTCACTTACAACTGCGATGGCCACACCTTCAACTACCTCGTCGACAACGGCTTCACTTATTGCGT GGTTGCTGTGGAGTCAGTTGGGCGACAGGTTCCAATTGCTTTCCTTGAAAGGATCAAAGAGGACTTCGGTAAGAGATATGGTGGAGGAAAAGCTGCAACA GCAGTTGCCCAAAGCCTGAACAAAGAATATGGGCCTAAGTTGAAGGAGCAGATGCAATATTGTGCAGATCATCCTGAGGAGGTCAGCAAACTAGCTAAGG TGAAAGCTCAGGTTTCTGAAGTGAAAGGAGTCATGATGGACAACATAGAGAAGGTTCTAGATCGTGGAGAGAAAATCGAGCTTATGGTTGACAAAACAGA AAACCTTAGGTCACAGGCGCAAGATTTCAGGCAGCAGGGGACACAGATGAGGAGAAAGATGTGGTTGCAGAACATGAAGATAAAGCTGATAGTACTGGGT ATCATAATCGCATTGATTCTCATCATAGTATTATCCGTTTGCGGGGGCTTCAAATGTCATTAG
AA sequence Show only first row Show all	>Lus10025933 pacid=23177635 polypeptide=Lus10025933 locus=Lus10025933.g ID=Lus10025933.BGIv1.0 annot-version=v1.0 MGQQSLIYSFVSRGTVILADFTEFTGNFTSIAAQCLQKLPPSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESVGRQVPIAFLERIKEDFGKRYGGGKAAT AVAQSLNKEYGPKLKEQMQYCADHPEEVSKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELMVDKTENLRSQAQDFRQQGTQMRRKMWLQNMKIKLIVLG IIIALILIIVLSVCGGFKCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	0	1
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	1.4	0.9346
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	1.7	0.9222
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	2.8	0.9108
AT4G08240			unknown protein		Lus10009881 [exp]	3.2	0.9310
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	6.3	0.8902
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	6.3	0.9081
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	6.5	0.9056
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	6.9	0.8792
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	8.7	0.8711
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	8.8	0.8936

Compare expression of checked genes

Lus10025933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.