Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48830 436 / 2e-149 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038165 [exp] 851 / 0 AT5G48830 437 / 1e-148 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241200 [exp] 558 / 0 AT5G48830 489 / 9e-170 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12452 [flax] [poplar] DUF3685 Protein of unknown function (DUF3685)
Representative CDS sequence Show only first row Show all	>Lus10025934 pacid=23177462 polypeptide=Lus10025934 locus=Lus10025934.g ID=Lus10025934.BGIv1.0 annot-version=v1.0 ATGAATTCCAGGAGAAGTGTTAAGTTTGACCAGCTTTCCGCATCAAAATGGGGTGGAGCTAAAGCATTTAAACTGAAGGACAAGGATGTTTCAAGGAGGT GTAGTTGCTTCGCATCTTTGGTGGATCCTGATGGTGCAACGCTGTCTGATTGGGTTTCTGTTAGCAACCAGTTGCTTTTAATGACCAGTGTATTCCTTAC TTACATGGCTGGAGTAATCCCCATCCACAAGTCCCCTTCATCTTCTCAGAAAAGTGTGCTGGACCCAAATCCAGTGCCAATTAACACGGGTTCTTCTGGT AGAGCTAGGAACAACAATGGTAACCAGATGGACTTAACGCTGACCTGGAATGTTGTGAAAGCTAAGCTCTTGGATTCCTTGGATGCTGTTGAGCAAGGGA GTTATCTGGTAGACGAATTTCTCAAGTCAGAGAAGCGGCATTCAAAGCGGCCGTCAAGTTTACATGCTGTGTCAGGAGGACCTAAGCTGCGGTTGCTTTG GGCTTCTTTTTATCACCTTGAGGAAGAGGCAGGCACTGTGAATAGCATATTAGGCGATGATGCAGCTGTTTCAATGGATGAATGGATGGCAATGTTTCCT AAAGTAATCAAAGACTCTTGTCATGATGTATGCACTGCATGGTTAGAAGAGGAACTTCAGCTTGATAGTAATAGATCGGACAAGGTACTAGCTTCTTTGA TGATTGAGAAGCTAAAAAGAGATGATGCTATTTTTCAAAGCATTAGAAAATCTGGAAAGGAAGATCTTTATGCAGAGCTACTGTATTTTCTTAAATATGG ATCACTAAGGAATCCTCGGTTATATGATCATCACTTGTTTGTAACACATGGAGAGTCCATATTAGAGGACTTGGTCATAAACATAGCTGATGGTATAGCT AATTTGTATCTGGAGCTTATATCTGTTGATGGCAATTTGCCAGATGGAGTAAATGACCTGGGTATGCGTATGTGTAGTTTGTCAACACGAGCTCTGCAAC GGTTACGCAATGAGGCAGCCCTGAATCAGTGGTTGTATCAAAACTTGGAGACAGTTGCATCGATATATGAAGATCGATTCGATCTTTGCGTTCTTGGGTC AAAAGTGATTGAGGAACCAAACAATAATCAGGGTCATAACAGTAGTTGGTGGAATCGGCTATCTCTTACAAAATCTGCCACAACATCATATGCAGTGAAA TGCATCGTGATCGACCAGTTCCGTATGCCTGCGAAGAGAACCAAAGAGTTAAGAGCCTTGATGGGATGGAGATACTACTACAGTCTATACTTGGAGCTAT ATGACATTGGGTTGCCGATGGTTAGAACAGTAATTGATAAAATCAGTAATGCCATCTCATTTTTTCTGGTGACCTTAATTGGAAGGTCCCTAGGCCTCAT CTACTCTGGTATTAGGCAGTCCCTGGGGTGGAAATGA
AA sequence Show only first row Show all	>Lus10025934 pacid=23177462 polypeptide=Lus10025934 locus=Lus10025934.g ID=Lus10025934.BGIv1.0 annot-version=v1.0 MNSRRSVKFDQLSASKWGGAKAFKLKDKDVSRRCSCFASLVDPDGATLSDWVSVSNQLLLMTSVFLTYMAGVIPIHKSPSSSQKSVLDPNPVPINTGSSG RARNNNGNQMDLTLTWNVVKAKLLDSLDAVEQGSYLVDEFLKSEKRHSKRPSSLHAVSGGPKLRLLWASFYHLEEEAGTVNSILGDDAAVSMDEWMAMFP KVIKDSCHDVCTAWLEEELQLDSNRSDKVLASLMIEKLKRDDAIFQSIRKSGKEDLYAELLYFLKYGSLRNPRLYDHHLFVTHGESILEDLVINIADGIA NLYLELISVDGNLPDGVNDLGMRMCSLSTRALQRLRNEAALNQWLYQNLETVASIYEDRFDLCVLGSKVIEEPNNNQGHNSSWWNRLSLTKSATTSYAVK CIVIDQFRMPAKRTKELRALMGWRYYYSLYLELYDIGLPMVRTVIDKISNAISFFLVTLIGRSLGLIYSGIRQSLGWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48830			unknown protein		Lus10025934 [exp]	0	1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	7.3	0.9032
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	10.2	0.9010
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	11.1	0.9117
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	14.0	0.8483
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	17.1	0.8980
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	24.9	0.8973
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	26.0	0.8699
AT1G62780			unknown protein		Lus10024592 [exp]	28.6	0.8852
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	28.7	0.8879
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	29.2	0.8942

Compare expression of checked genes

Lus10025934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.