Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26880 68 / 4e-14 Plant self-incompatibility protein S1 family (.1) AT5G04350 60 / 4e-11 Plant self-incompatibility protein S1 family (.1) AT4G29035 58 / 3e-10 Plant self-incompatibility protein S1 family (.1) AT4G16295 57 / 4e-10 SPH1 S-protein homologue 1 (.1) AT5G04347 56 / 1e-09 Plant self-incompatibility protein S1 family (.1) AT5G12060 56 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT4G16195 55 / 3e-09 Plant self-incompatibility protein S1 family (.1) AT3G17080 54 / 4e-09 Plant self-incompatibility protein S1 family (.1) AT1G11765 54 / 6e-09 Plant self-incompatibility protein S1 family (.1) AT2G06090 53 / 8e-09 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038163 [exp] 288 / 9e-100 AT3G26880 65 / 3e-14 Plant self-incompatibility protein S1 family (.1) Lus10038164 [exp] 273 / 8e-94 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10025935 [exp] 272 / 1e-93 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 88 / 2e-21 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10022831 [exp] 84 / 1e-19 AT2G06090 63 / 2e-13 Plant self-incompatibility protein S1 family (.1) Lus10022824 [exp] 76 / 8e-17 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10011892 [exp] 76 / 1e-16 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10011895 [exp] 75 / 3e-16 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10002747 [exp] 72 / 5e-16 AT5G04350 57 / 3e-11 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 77 / 4e-17 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 71 / 6e-15 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.010G008300 [exp] 67 / 2e-13 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 66 / 4e-13 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.006G170200 [exp] 55 / 4e-09 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 53 / 1e-08 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 48 / 1e-06 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 47 / 3e-06 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.015G130300 [exp] 45 / 7e-06 AT3G17080 52 / 3e-09 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 45 / 7e-06 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10025937 pacid=23177684 polypeptide=Lus10025937 locus=Lus10025937.g ID=Lus10025937.BGIv1.0 annot-version=v1.0 ATGAGGTCGCAAATGATGATGTCAAAAATACTAGTGGCAGTGATTCTGAGAGCAATAGTAACGGCGAGTCCATCGGCGGCAACGCATTTTGACATCAATG TCATAAACCAGTTAAGCCACGACCGCAAACTGTCAGTTCACTGCCAATCGAAGGACACCAATCTAGGCTCCCGAAAATTAGCCGTCGGCGAAGTTTATGG GTGGGGCTTCTCCAGAAACATTTTTGGCACAACACTTTTCTGGTGCAATCTTTCATGTCACGGTGGTCATAATCGTCTTTCGTTCAACGCATACGATGAA AGTCAAGGAAAGGGCATGAAACCAATTTACGAACTCAACTGGGAACTTAAGGATGATGGCCTTTATTTCCACGACAAAGATTCTGGCATGGAAGTTTTGG TTGCTCCATGGATGCAGCAATTAGAATCTTGCACAGCAAGTCACCAGATTGGGAATCATGAACAGCTGCGCACGACTATCGTCAAACTACCTAAATATTG CTGCTCATCAGTCCTATCTAGGCCTTCCCAAAACGCTACAAACCCTTTATGGAAAATACAGATAGCTACGATTGAAGTAATAGCACAAGAACTAAAACCT TCATCCATGGTTCGTCTGGGGTCAAAATTAGAATGCTTCATGACTTCTTACAACATTGAACCAAGACCCACAAACAATGTAGACACCACGAGATGCAACG CAAACAATGAAACAACTGAAACTGCTTGCAAGCTTTACTTGAAGCTCCGCCAAACTGGAGGATATGAGAATCAACAAGGGTACAAACAAGGAACGTGGCA TTCGATGCACATTCAAGGCACTGTGGGCACATGA
AA sequence Show only first row Show all	>Lus10025937 pacid=23177684 polypeptide=Lus10025937 locus=Lus10025937.g ID=Lus10025937.BGIv1.0 annot-version=v1.0 MRSQMMMSKILVAVILRAIVTASPSAATHFDINVINQLSHDRKLSVHCQSKDTNLGSRKLAVGEVYGWGFSRNIFGTTLFWCNLSCHGGHNRLSFNAYDE SQGKGMKPIYELNWELKDDGLYFHDKDSGMEVLVAPWMQQLESCTASHQIGNHEQLRTTIVKLPKYCCSSVLSRPSQNATNPLWKIQIATIEVIAQELKP SSMVRLGSKLECFMTSYNIEPRPTNNVDTTRCNANNETTETACKLYLKLRQTGGYENQQGYKQGTWHSMHIQGTVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	0	1
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	1.0	0.9161
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	3.5	0.8789
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	3.7	0.8877
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	4.5	0.8788
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10015766 [exp]	4.5	0.8594
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	6.0	0.8596
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	7.1	0.8762
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10007820 [exp]	7.1	0.8474
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	7.3	0.8653
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	8.1	0.8589

Compare expression of checked genes

Lus10025937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.