Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24760 335 / 3e-113 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G23390 62 / 1e-10 Kelch repeat-containing F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007855 [exp] 45 / 8e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10003029 [exp] 43 / 0.0003 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013215 [exp] 42 / 0.001 AT5G42350 647 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042900 [exp] 69 / 2e-12 AT1G23390 248 / 2e-78 Kelch repeat-containing F-box family protein (.1) Potri.003G062000 [exp] 51 / 8e-07 AT1G27340 83 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 44 / 0.0001 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G166500 [exp] 43 / 0.0002 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025938 pacid=23177451 polypeptide=Lus10025938 locus=Lus10025938.g ID=Lus10025938.BGIv1.0 annot-version=v1.0 ATGTCAGAGCCGTTCAGTTACATAAGCACAGACTTGACGGAACTAATCCTGGCCCACCTTCCCATCCCATCACTCGTCCGCGCCTCCGCAGTCAACTCCC TCTTCCGTACTCTCATCTCTTCGCCGACATTCCTTACCCTCCCTCACCACCGCCGCCTCCCTTGGTTCTTCCTCCACGGCATCCACAACACTTCCTCCAA ATACAATCAGTCCTTCGCCTTCGATCCTCTCTCCAACTCCTGGATCCGCCTCCCTTCTTCTTCATCCTCCTCTTCCCCTGACTTCATCGGCTCCGGCGGA TTCCTCTTCTCCACCGCTCTCTCCTTCTCCTTCTCCCCACTCCTCAGCTCCCGCTGGAAATCCACTTCCCCTCTCCAATTCTCCCGCGTCAATCCCCTTG TCGGCGTCTTCTCCGAAGGGTGTCAGTTCCCCCCTAATTCCAATCTCAAATTCATCGTCGTCGGCGGGAGCCGCTTTATCGGCGGATTGGTCGACATCGA GGACCAGTTAGCAGTCGAGATTTATGATCCTTGCTCCGATTCATGGGATCTCTGCCCTCCTCTCCCTGCGGAATTCCACTCGGGTAATACTAACACCTCC TCGCTCACTCTAACATCGGCTCTATTCAAAGGAAGCTTCTTTGTCTTTGGAATTTACTCTTTCTTAATCTCCTCCTTCGACTTGAACACCCGCGTCTGGA GTCGAGTCCGGATTCTTAGCCCGCCCGGCGTTCTCTTTGCATTCTTAATTCCCTGCGATGAAATGCTTGTTCTCGCTGGTATATGCAATGGCCCGTCTTT GAAGCTGTGGAGGATTGATGAGGTGAGCATGGAGTTCACGGAGATTGGGATTATGCCCCGTGATTTTCTATACGGGTTGGTTGATTACGATGATGACGAT AAGTTTGCGACGTTGAAATGTGTTGGGATGGGGAATCTTGTATATGTGTTCAATGAAGAGTATCACAAGAGATACCCTGCTTGTCTCTGTGAGATCAGTA GCTTTGATTCTGATGCCAAGTGTAGCTGGAGGAGACTGCCTGAATTGCCTTCTCCTGTTAATGAGTTCCACAGAGTTGTCAGCTTTTGCTCTACTGTTCT TCCTCATACTCTCTTTGGATGA
AA sequence Show only first row Show all	>Lus10025938 pacid=23177451 polypeptide=Lus10025938 locus=Lus10025938.g ID=Lus10025938.BGIv1.0 annot-version=v1.0 MSEPFSYISTDLTELILAHLPIPSLVRASAVNSLFRTLISSPTFLTLPHHRRLPWFFLHGIHNTSSKYNQSFAFDPLSNSWIRLPSSSSSSSPDFIGSGG FLFSTALSFSFSPLLSSRWKSTSPLQFSRVNPLVGVFSEGCQFPPNSNLKFIVVGGSRFIGGLVDIEDQLAVEIYDPCSDSWDLCPPLPAEFHSGNTNTS SLTLTSALFKGSFFVFGIYSFLISSFDLNTRVWSRVRILSPPGVLFAFLIPCDEMLVLAGICNGPSLKLWRIDEVSMEFTEIGIMPRDFLYGLVDYDDDD KFATLKCVGMGNLVYVFNEEYHKRYPACLCEISSFDSDAKCSWRRLPELPSPVNEFHRVVSFCSTVLPHTLFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	0	1
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	2.6	0.8847
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	3.5	0.8471
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	4.9	0.8497
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	4.9	0.8615
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	7.1	0.8177
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10028770 [exp]	12.5	0.8305
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	15.5	0.8334
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	17.7	0.7897
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	21.3	0.8454
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	21.4	0.8255

Compare expression of checked genes

Lus10025938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.