Plant FIBer expression Database

Lus10025939 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24750 77 / 7e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038162
[exp]
300 / 6e-105 AT3G24750 92 / 2e-23 unknown protein
Lus10022808
[exp]
54 / 1e-08 AT3G60160 504 / 7e-169 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10011875
[exp]
52 / 7e-08 AT3G60160 211 / 8e-60 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G240300
[exp]
104 / 3e-27 AT3G24750 76 / 1e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10025939 pacid=23177631 polypeptide=Lus10025939 locus=Lus10025939.g ID=Lus10025939.BGIv1.0 annot-version=v1.0
ATGATGGGTACTGCAGTAGGAGTCGTAGTGGTTCACAAGAGATCAGATTCCTCCTCTGCTATGGCTGCTGCTGCTGCAGCTCATCATGTGGGTAACAAAG
TTCTGCCCATCACCAGTGACATCACCGCCGCATTGCCTCCTATGGTGCCGTCATCGAGAAAAGGAAGCTCAGTGGAGCAAGATGAGAAGAGAGATATCAA
GCTCAAAGGTGACAACATCAGCAACAAAAGTAAAGCCATCTCGAGGATGAAGGAGCTCATCAGATGGGCTGCTGCTTCCAAATCTGATAAGAATGGCAAG
TTCCTTGGCCGCAAGGTGCTGCAACAATTTAGAAACCGATCAGCAATAAAGGGAATGCAAACTGAGCAAGATCCAACGGGGAGATCAAACAAGTACAATT
ACGAGAGCAATAACCACGTTGACTCGCCGAGGTTCAGCTTGAGATGGGAAGTGGAAAGCAGCTGCTCCACTACTTGCTCTTCAATGTCCATGGCTTCTTG
TCCTGCTGCTCTACATGCTGATGACAACAGAAAAGCCAACTGGATCACCACTGATTCTGACTTTGTGGTATTGGAGCTATGA
AA sequence
>Lus10025939 pacid=23177631 polypeptide=Lus10025939 locus=Lus10025939.g ID=Lus10025939.BGIv1.0 annot-version=v1.0
MMGTAVGVVVVHKRSDSSSAMAAAAAAHHVGNKVLPITSDITAALPPMVPSSRKGSSVEQDEKRDIKLKGDNISNKSKAISRMKELIRWAAASKSDKNGK
FLGRKVLQQFRNRSAIKGMQTEQDPTGRSNKYNYESNNHVDSPRFSLRWEVESSCSTTCSSMSMASCPAALHADDNRKANWITTDSDFVVLEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24750 unknown protein Lus10025939
[exp]
0 1
AT3G24750 unknown protein Lus10038162
[exp]
1.0 0.9861
AT5G14920 Gibberellin-regulated family p... Lus10032168
[exp]
1.4 0.9758
AT3G08030 Protein of unknown function, D... Lus10016393
[exp]
2.8 0.9736
AT3G05390 unknown protein Lus10029907
[exp]
3.0 0.9754
AT5G10130 Pollen Ole e 1 allergen and ex... Lus10026040
[exp]
3.5 0.9665
AT2G17080 Arabidopsis protein of unknown... Lus10025126
[exp]
4.5 0.9694
AT2G17080 Arabidopsis protein of unknown... Lus10023965
[exp]
5.3 0.9657
AT3G21330 bHLH bHLH087 basic helix-loop-helix (bHLH) ... Lus10009745
[exp]
6.0 0.9638
AT2G17080 Arabidopsis protein of unknown... Lus10023964
[exp]
7.4 0.9630
AT1G02205 CER1 ECERIFERUM 1, Fatty acid hydro... Lus10023109
[exp]
8.2 0.9251

Lus10025939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.