Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT3G61150	476 / 2e-157	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
AT4G00730	472 / 4e-156	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT5G52170	462 / 5e-154	HD	HDG7	homeodomain GLABROUS 7 (.1)
AT4G04890	464 / 1e-153	HD	PDF2	protodermal factor 2 (.1)
AT4G21750	452 / 1e-148	HD	ATML1	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT1G05230	447 / 2e-147	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3.4)
AT2G32370	349 / 8e-110	HD	HDG3	homeodomain GLABROUS 3 (.1)
AT1G73360	347 / 6e-109	HD	ATHDG11, HDG11, EDT1	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
AT1G17920	345 / 2e-108	HD	HDG12	homeodomain GLABROUS 12 (.1)
AT4G25530	344 / 4e-108	HD	HDG6, FWA	HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10014997 [exp]	595 / 0	AT4G00730	559 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10027437 [exp]	559 / 0	AT3G61150	715 / 0.0	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10005759 [exp]	538 / 0	AT3G61150	706 / 0.0	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10031933 [exp]	494 / 4e-167	AT3G61150	410 / 1e-133	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10007650 [exp]	442 / 3e-145	AT4G04890	1121 / 0.0	protodermal factor 2 (.1)
Lus10006765 [exp]	441 / 7e-145	AT4G21750	1152 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10020059 [exp]	440 / 7e-145	AT4G21750	1130 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10027175 [exp]	427 / 2e-138	AT1G05230	1138 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Lus10039667 [exp]	426 / 3e-138	AT1G05230	1142 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G141800 [exp]	530 / 4e-179	AT4G00730	829 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.012G139300 [exp]	528 / 1e-178	AT4G00730	838 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.002G154700 [exp]	500 / 1e-166	AT4G00730	1057 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.014G075200 [exp]	494 / 2e-164	AT4G00730	1045 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.002G230200 [exp]	463 / 4e-153	AT1G05230	1159 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Potri.014G152000 [exp]	452 / 6e-149	AT1G05230	1179 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Potri.011G025000 [exp]	446 / 5e-147	AT4G21750	1164 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.004G020400 [exp]	445 / 9e-147	AT4G04890	1185 / 0.0	protodermal factor 2 (.1)
Potri.015G034100 [exp]	393 / 8e-127	AT1G73360	927 / 0.0	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Potri.003G052400 [exp]	375 / 2e-119	AT1G79840	948 / 0.0	GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0209 [flax] [poplar]	Bet_v_1_like	PF01852 [flax] [poplar]	START	START domain
CL0123 [flax] [poplar]	HTH	PF00046 [flax] [poplar]	Homeodomain	Homeodomain

Representative CDS sequence

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>Lus10025940 pacid=23177649 polypeptide=Lus10025940 locus=Lus10025940.g ID=Lus10025940.BGIv1.0 annot-version=v1.0

ATGGAAAAAACAAGTGGTGTTCATCATGAACTTAACATTCCTACTGGTGCTGGCAAACAAAAGGACGTCGCCCAACAAGTTGATGTTGTTGCTGACAACT

TGGTGGACAGACTCGATGTCAAACCCGAGTTAGGTTCGAACTTGAGCCAGTTGGTTGGCTCAAGTCATGGTGAGATGCAACAACGTACTAGGAAGAGGAA

GTACTATCGCCACACTGAGGAGCAAATCAAAGAGCTCGAAAGTTTCTTCGAGGGGTGTGCTTATCCGGATGAAAAGCAACTGAATGCGCTCAGCAGAAAA

CTTGGGTTGGAGATGAAGCAAGTCAAGTTCTGGTTTCAGAACCACCGAATCCAAATAAAAGCTCAACATAAGCGTCATGGCATCATAATGCTTCACGCGG

AAAATAACAAGCTACGAACAGAGAACCAATTCTTGAGAACAAACTTAATAAACGAAATCTGCAACGGATGTGGCGGCCCTGTGATCCCAGCCCCACTCTC

CTTCAAGGAACAACAACTAAGATGGGAGAATTCTATACTCGAGGAAATGATCATACGTGTCCGATCCGTATGTAACAATTTCCTCGGCATACCTTTGATA

TCCTCCACTCTTGCGTCATCATCATCGGGTGCTGCTACAACAAGACTCGATGGCACAATAGAGGGGCTCAATCTTGGTACTTTGCCTAGTAGTACACCTA

TCTATGAAAAGCTCATGTATGTGCTTTTCTCACAGTTGGCCATGAATGAGTTTACGACCATGGTAAACATTGATGGTTTTGGTAATTTGAGTGACGTGCT

TAATCTCGAAGAGTATGATCGAATGGTTGTGCCAAATGGGTTATGGAACGAGGCAAACAAGGTGTCAAGGACTGTTCTCATGAGGAGCTTGCCACTTGTT

GAACTATTAATGGATGTGAACCTTTGGAGTGAGGCTTTTACCGGATTGGTGAGCCAGGGTACCACACTTGATATTATATCTTTTGGTGTTGATGGAACCA

GAAATGGTACTTTGCAAATGATGAGTGCTGAGTTTTACACACTTTCGCCAATGGTCCCTGCGCGTCATACGAAGTTTCTTCGATCCTGTAAGAAGTTGGC

GGATGGTGTTTGGGCAGTCATGGATCTCTCGCTTAGCACGAGCCAAGAAGCGTCAAGTTCAAGATCGGCTCCTATTGCCATGAGATCACTTCCTTCTGGA

TGCATCATACACGATTTGTTCAATGGTTGTTGCGAGGTGACATGGGTGGATAACTCATTGTACAACGAGAACTCGTTCAATCAGTTTATGCAACCGATGG

TTAGTAGCGGTATGGGTTTCGGGGCCACAAGGTGGATTGCGACTCTCCAACGATATTGCGAGTCTATCGCAATCCTCATGTCTTGTACTCATTACTTGCC

TCAAAACCATTCAATGGCTGGCAAGAAGAGCTTGTTCGAGCTGTCACGGAGGATGGTGAATCTATACTGCAGCGGAGTCTCCGTCGGCTCCTCTTCCTCC

ATGTGGGCGAAGCTATTACCAGTACTGGCAAACATGAGCCATAACGTAAGCATCATGGTAAGGAAAAACTCGAGCGAACTAGGAGAGACGATCGGAGTCA

CATTAAGCGCCTCGACTTCTGTGTGGCTTCCCATCTCCCGTAGGACGCTGTTTCAGTATCTTGTGAATCATGCCACAAGGAAAGATTGGGATGTTCTGGC

TAATGGCGAGAAACTTACAGAGCTATTTTGTCTCCCCAAGACTAATGTTCGTGGAAACTCCATCTCTGTCTTTCACACTCCGCAATATGGTGGTAGCCCT

GGGCCTTTATTGATCCTCCAAGAAATATGGAACGACGAGTCCTCTTCGTTGATGGTGTACGCACCTGTGGACATGCGGTCGATGCAGGTGGTGATGAATG

GAGGAGACACCACCTCTGTGTCTCTCTTGCCATCCGGGTTCGCCATCTTTCCTGATAGCAACAGTGGCGTTGGTAGTGGTGATGCTAATACTTCCATTGC

TATTGGTAGTACTGGAGGATGTATCATGACGGTAGGGTTCCAGATATTCGTGAGCTCCAATCCGACGGTGGAGGTGACGAGGACCTCGGTGGAGTTCATG

GACCAAGCCGTCTCTTGCACTATTAAACGTATCAAGGATATCTTTCAGATTTCAGAAATTTGA

AA sequence

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>Lus10025940 pacid=23177649 polypeptide=Lus10025940 locus=Lus10025940.g ID=Lus10025940.BGIv1.0 annot-version=v1.0

MEKTSGVHHELNIPTGAGKQKDVAQQVDVVADNLVDRLDVKPELGSNLSQLVGSSHGEMQQRTRKRKYYRHTEEQIKELESFFEGCAYPDEKQLNALSRK

LGLEMKQVKFWFQNHRIQIKAQHKRHGIIMLHAENNKLRTENQFLRTNLINEICNGCGGPVIPAPLSFKEQQLRWENSILEEMIIRVRSVCNNFLGIPLI

SSTLASSSSGAATTRLDGTIEGLNLGTLPSSTPIYEKLMYVLFSQLAMNEFTTMVNIDGFGNLSDVLNLEEYDRMVVPNGLWNEANKVSRTVLMRSLPLV

ELLMDVNLWSEAFTGLVSQGTTLDIISFGVDGTRNGTLQMMSAEFYTLSPMVPARHTKFLRSCKKLADGVWAVMDLSLSTSQEASSSRSAPIAMRSLPSG

CIIHDLFNGCCEVTWVDNSLYNENSFNQFMQPMVSSGMGFGATRWIATLQRYCESIAILMSCTHYLPQNHSMAGKKSLFELSRRMVNLYCSGVSVGSSSS

MWAKLLPVLANMSHNVSIMVRKNSSELGETIGVTLSASTSVWLPISRRTLFQYLVNHATRKDWDVLANGEKLTELFCLPKTNVRGNSISVFHTPQYGGSP

GPLLILQEIWNDESSSLMVYAPVDMRSMQVVMNGGDTTSVSLLPSGFAIFPDSNSGVGSGDANTSIAIGSTGGCIMTVGFQIFVSSNPTVEVTRTSVEFM

DQAVSCTIKRIKDIFQISEI

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10025940 [exp]	0	1

Lus10025940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10025940 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10025940 coexpression network