Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24715 391 / 2e-117 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 383 / 4e-115 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 366 / 3e-108 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 365 / 5e-107 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 357 / 2e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 337 / 3e-98 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 334 / 1e-96 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 147 / 5e-36 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT2G17700 144 / 1e-35 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 144 / 1e-35 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038159 [exp] 1609 / 0 AT3G24715 229 / 4e-62 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 521 / 4e-176 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 364 / 1e-111 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 364 / 1e-107 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 340 / 2e-103 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 340 / 2e-99 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 338 / 7e-97 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 336 / 9e-97 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 156 / 2e-41 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176100 [exp] 376 / 3e-112 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 373 / 5e-110 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 370 / 6e-110 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G110000 [exp] 373 / 3e-109 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 371 / 9e-109 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 362 / 2e-106 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.006G170700 [exp] 338 / 1e-98 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 343 / 2e-98 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 333 / 2e-96 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 333 / 7e-95 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10025941 pacid=23177512 polypeptide=Lus10025941 locus=Lus10025941.g ID=Lus10025941.BGIv1.0 annot-version=v1.0 ATGGATGCTTCTGCACAATGGATGCAGCACCAGCAGGAATTGGGATCTACTTTCAGTGGCGGTGCAGGGAGGAATGTACATAATATATCCATGCAGACGG GTGAGGAGTTCTCAATGGAGTTTCTCCAAGAGCGTGCTAATGCTAGGGGGACGACTCGTCCTATGCCAAACACGGGTCCAACTAATGATAGAAGAGGTTC GTTTAATAGTAATGACTTGATTCATCAGCTGGGCTATGAGGATGCTTCTCGTTTTGTTACTTTGAAGAGAATGGATTCCGATGTTTCTGCTTCTTCAATG GGATCTCCAAGGGAGAATGAAAATTCTTACTTTGTTGATAAGGTAACTTGGGTTAATGTGGAGGACGGTGGTAATGTAGTTCACAGATCGAGGATGGCAT ATGGTGAGCTGAATGATCGAGGGCCTGGTTTGGGTTCAACAACTTCTGGCTTTTACGCCCACGAATCTCCTCACGGAGACAACATTAATGGCCTGCTAAA TTTTTCTGACAGACTTCAGCCAGGAAAAATGAAACTCCTTTGTAGTTCTGGTGGCAAAATTCTGCCGAGGCCTGGTGATGGCAGGTTAAGATATGTAGGT GGGGAGACCCGCATTATTTCCATTACCAAGAATCTATCATGGAATGATCTTGTGAGAAAAACTTCTTGTATTTGCAATCAACCTCACTTTATCAAGTACC AGCTTCCGGGGGAGGATCTTGATGCACTTATATCAGTGTCTTCTGATGAGGACCTTCAGAATATGCTAGAGGAATGCTGTGGACTTGAAAAGCCTGGTGG TTCTTCAAGTCCAAGGCTTCGTATTTTTCTGATTCCAATGGGTGAATATGACACTTTGTCATCTTTTGATGTTACTACATCCATGCTGCAAGATAGTCCA GACTTCCAATATGTTGTAGCTGTCAATGGCATTGTTGATCCAAGTCCCAGGAAAAACTGTCCTGAGAGGTCATCAGGAAGTGATTCAAGTGCATTTCCAG TGAAGTTCAATCGTAATCCAAGCTTTCACAAGCGTGCTCCACCTTCCTTACTACCTTTAGAAATCAATGGTAGTTTTAATTCTTTTCAGAACATGAGATC TCCATATCCTTCTCCTCCCATCTCTCCAGCTCCATGTTCTCCCATACCCTTACATGGGGATAGGTCAAGTATGGAAAGCAATAATTCCTTCATGCCAGCA TCATCATCAGCTGATAATTCTGGCCTTAACACAGGTTATCACCAACAACTGCATGAGTCAGTGGCCTTGACAAGGTATAGACATCCCTGCAGACATATTG ATAGTGGACAGTGTGAACAACCATATGTTATGCAATATCAGAATTTTCATTTCAATAAAGAACCTGGTAGCCCTTCAGGTCATTGCAATGGTTTTTATCA CGACAGGAATATTCAGAGGGGTCACCACTTCCTCTCCGATAATCCTATTATTTCATCTTCAGAGGATTCTGGAGGTGTATTGATGAGCGACTGCTCTCAT GGCATGCCACATGCATTTTCAGATTCAAAACTGCAGGAGCGAGGGGAAATGTCTGCTTATTGTTCACAGGAAGGAATGGGTACATCACACCAGCTTAAAC ATTCCAAGACACTAATATCCCCTCTTTCGAATTTGAGTACTTCTAGGGAAAAGCCAATCCAGGTCTTTGAATCACGGCACCGAGCTCTTAGCATCACAGA TGACAAATATCATGTTTCAAACCTTAGCAACGAAAAAATATTGGATTTGGAAGCAACCAGTAAGTGTGACCAAATTGATCCATTATCACAACAAAGCAAA ATGAGCTTTTGGGAGAAGCCACCTATAGATTGCAAAAAGAAATTACTGAATTTTAACGTTGAGCCCTTATCTTCATGCGGTAATTCTCTCTCAAGAAACA TCCAAACACATGCGGAAGAATATGCTGCCGGTGAGGATTTGAAGCCTACTGTTAATAACTTGGAACATCCCCAGAATTATCAGCTAGAAAGTGTCCCTTC AGATTTCCTGACGAATCGCATGACAACCAGTGATCAACCAGGTGCATCCACCATAACAGTACGCATAAAACAAGAACCTGACATGTCAATGACGAAGATT GCTGATGTCAAATTGCAGAATACTAGTCAGCATCCCAACGCTGAAAGTTCTTTGCATAGTCTTGTATTCCAGCCATCGTACAACACATTTCCTCACAGGG AGAATACAATTCAATCGATTGAAGGCCAAATGAGGCCTGTACACACATTCACACAGGTGGATGAAAATATTGCTGCGAAGGATTTTGAGAAGCTGAATTA CGGAGAATATAGAGATGAGAGTTCAGATACTGAGGATATCTTGCTGATACAGAAAAGAAACCCAAGTGAACAAAATGGTCTAATCATGTTGGAGCCTTTG GTTGCCGTTACAGATGGCAATGAACTTAGTAGTGTTATAGTTTCATCTGCAGCTGCCTCTCGAGTCACTATCCCGACTAGCGGTGGCTTTGTCTCTGGTA CGGTGTCAGATTTCGAATCCCCACATGTGATCGTGCAGCCCATTGCTGCTAGAGAGACCCGCAGTGATATTTTGTCGACTGTCACAATGAGGCTGGAGAG TGTCTTTCAAGAGTCTGAGTTTGGGGGAACAAAAGCTGATGAACGAGATGTAGATGGATGCATCACTGATGTGGCCATAGCAGAAATGGAGGCTAGCATC TATGGATTGCAGACAAAAGATTTCTGGAGGGAAGCACACATCCTGTCAACCCTCCACCACCCAAATGTGGTAGCGTTTTATGGGATTGTTCCTGATGGCC CTGGAGGAACCCTAGCGACTGTAACTGAATTCATGGTTAATGGATCTCTTAGGCTTGCCTTACTTAAGAAGGACAAGTCTCTTGACCGCCGTAAGAAACT TATGATTGCAATGGATGCTGCATTTGGCATGGAATATTTGCACTCTAAACGTATTGTTCATTTTGATCTGAAGTGCGACAATTTGTTGGTTAACCTGAGG GATCCACACCGGCCTGTATGCAAGGTTGCGGATTTCGGATTGTCAAGGATCAAACGCAACACTCTAGTATCCGGTGGTGTTCGTGGAACCCTTCCTTGGA TGGCACCAGAATTGTTAAATGGAAACAGTAGTCGGGTTTCTGAAAAGGTTGATGTTTTCTCATTTGGCATCTCAATGTGGGAGATCTTGACTGGAGAGGA GCCTTACGCTGACATGCACTGTGGTGCTATTATTGGTGGGATCGTAAAGAATACTCTCCGACCTCCAGTATCTGAAGAATGCGATCAGGAATGGAGAATA CTGATGGAGCAATGTTGGGCACCTAACCCAGATTCAAGACCGCCGTTTACAGAGATAGCGAATCGGTTGCGAGCTATGTCCCTGCTAGCACTTCAAGCTA AGGGAACGGGTAATCAAACGAGAGACAAACCAAATCAGAACCATAAATCACCATATGACCACCAGCAAAGTTAA
AA sequence Show only first row Show all	>Lus10025941 pacid=23177512 polypeptide=Lus10025941 locus=Lus10025941.g ID=Lus10025941.BGIv1.0 annot-version=v1.0 MDASAQWMQHQQELGSTFSGGAGRNVHNISMQTGEEFSMEFLQERANARGTTRPMPNTGPTNDRRGSFNSNDLIHQLGYEDASRFVTLKRMDSDVSASSM GSPRENENSYFVDKVTWVNVEDGGNVVHRSRMAYGELNDRGPGLGSTTSGFYAHESPHGDNINGLLNFSDRLQPGKMKLLCSSGGKILPRPGDGRLRYVG GETRIISITKNLSWNDLVRKTSCICNQPHFIKYQLPGEDLDALISVSSDEDLQNMLEECCGLEKPGGSSSPRLRIFLIPMGEYDTLSSFDVTTSMLQDSP DFQYVVAVNGIVDPSPRKNCPERSSGSDSSAFPVKFNRNPSFHKRAPPSLLPLEINGSFNSFQNMRSPYPSPPISPAPCSPIPLHGDRSSMESNNSFMPA SSSADNSGLNTGYHQQLHESVALTRYRHPCRHIDSGQCEQPYVMQYQNFHFNKEPGSPSGHCNGFYHDRNIQRGHHFLSDNPIISSSEDSGGVLMSDCSH GMPHAFSDSKLQERGEMSAYCSQEGMGTSHQLKHSKTLISPLSNLSTSREKPIQVFESRHRALSITDDKYHVSNLSNEKILDLEATSKCDQIDPLSQQSK MSFWEKPPIDCKKKLLNFNVEPLSSCGNSLSRNIQTHAEEYAAGEDLKPTVNNLEHPQNYQLESVPSDFLTNRMTTSDQPGASTITVRIKQEPDMSMTKI ADVKLQNTSQHPNAESSLHSLVFQPSYNTFPHRENTIQSIEGQMRPVHTFTQVDENIAAKDFEKLNYGEYRDESSDTEDILLIQKRNPSEQNGLIMLEPL VAVTDGNELSSVIVSSAAASRVTIPTSGGFVSGTVSDFESPHVIVQPIAARETRSDILSTVTMRLESVFQESEFGGTKADERDVDGCITDVAIAEMEASI YGLQTKDFWREAHILSTLHHPNVVAFYGIVPDGPGGTLATVTEFMVNGSLRLALLKKDKSLDRRKKLMIAMDAAFGMEYLHSKRIVHFDLKCDNLLVNLR DPHRPVCKVADFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWEILTGEEPYADMHCGAIIGGIVKNTLRPPVSEECDQEWRI LMEQCWAPNPDSRPPFTEIANRLRAMSLLALQAKGTGNQTRDKPNQNHKSPYDHQQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	0	1
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	1.4	0.9263
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	2.6	0.8927
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	2.8	0.8991
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	3.2	0.8878
AT2G40070			unknown protein		Lus10011374 [exp]	3.5	0.8945
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	3.5	0.9040
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	3.5	0.9102
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	5.9	0.8971
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	6.9	0.8854
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	9.4	0.8857

Compare expression of checked genes

Lus10025941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.