Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28650 1216 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 1006 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 761 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G65700 633 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 628 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 619 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 598 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 550 / 2e-180 HSL1 HAESA-like 1 (.1) AT5G49660 534 / 2e-174 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65710 528 / 5e-172 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000814 [exp] 1127 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 1112 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 729 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 722 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10039641 [exp] 629 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 610 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 587 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 583 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036242 [exp] 579 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256500 [exp] 1366 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G048800 [exp] 1198 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 1194 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G126100 [exp] 768 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 764 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.007G009200 [exp] 634 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 629 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 627 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 610 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 600 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025943 pacid=23173148 polypeptide=Lus10025943 locus=Lus10025943.g ID=Lus10025943.BGIv1.0 annot-version=v1.0 ATGCCGCAGAAAAAATACCTCTTCTTCTTCTTCCTCTTCTCATTTGGGTTATTTGCCAATCTGGCAATTGCGGATGATGAAGTTTCAGCTCTTTGGGCCA TTAAACATGGCGTCTCAGATCCGCTGAACAGCCTACAAGACTGGAAGTTGTCGAGTAATCACTGTAACTGGACAGGGGTTCGCTGCAATGTCAACGGCAA AGTGGAAAGCCTGGATCTTTCGCACATGAATCTCAGCGGGATGGTCTCCGATGAAATCTGGAAGCTTCAGAGTCTGACTTCTCTGAACCTCTGCTGCAAT GGCTTCTCCTCCACTCTGACGCAATCCCTGTCGAATCTCACGGCTCTTAGGAGTATTGACGTCAGCCAAAATCTCTTCTCTGGCGCATTTCCGACCGGTT TCGGAAGTTCTTCTTCAGTTCTGACCTGGCTCAATGCTTCCAGCAATAACTTCTCAGGACCCATTCCTGACGATCTGGGCCGAGGAGCATCGTCGTTGCT GGAAGCTCTCGATCTTCGAGGAAACTTCTTCCAGGGTGAAATTCCTGTTTCTCTTGCAGGTTTGAAGAAATTGAAATTCCTTGGATTGTCAGGGAACAAT TTAACAGGATTTTTACCTGCTGAGTTGGGTCAGCTTTCTTCCCTGGAGAGACTAATCATTGGGTATAACGAGTTTGATGGTGGAATTCCAGCCGAATTCG GGAACCTGACCAATCTGATGTATCTCGATTTGGCTGTCGGGAATCTCAGCGGGGAGATTCCTGCTGAGTTGGGGAACCTGAAGATGGTTGAGACGGTTTT CTTCTATCAGAACAATTTCGAAGGGCGGATTCCTCCGTCAATCGGTAGCATGTCCTCTCTCCAACTTCTGGATCTCTCTGAAAACTTCTTATCAGGAGAG ATTCCTTCTGAGATCGGCTTGCTGAAGAACTTGCAGCTCTTGAATGTGATGTGCAACCAGCTGTCAGGTTCAGTTCCTGAAACCCTTGGGAATCTGCCTC AGTTGCAGGTGTTGGAGCTTTGGAACAATTCTTTCTCCGGTTCGTTGCCAAGTGACCTGGGTGGGGAATCTCCATTGCAGTGGGTAGATGTTTCATCAAA TTCCTTCTCCGGACCGATTCCTGCGAGCTTGTGCAATGCTGGCAACCTCACCAAGCTCATACTTTTCAACAATGGCTTCTCCGGTCCTGTACCGGCTAGT CTTTCGTCGTGTCAATCACTTGTTCGCGTAAGGATGCAGAACAATCTACTTACCGGTACGATTCCGGTTGGATTTGGTAGCCTTGGGAAGCTTCAGAGAA ACAACCTCAGATCTTATCTCCCTTCCACAATTCTGTCCATCCCCAATCTTCAATCCTTCATGGCCTCGGGAAACAATCTGGAAGGCGAAATCCCTGGCCA GTTTCAGGGCTGCCCTGCTCTTTCAATTCTTGATCTCTCGTCAAACAATTTCTCCGGAACGATTCCGGCCAGCATTGCCTCCTGTGAGAGGCTAGTGAAT TTGAATCTCAATAATAACCAGTTATATGGAGAAATCCCGGAGTCCATTTCCAGGATGCCTACATTGGCCATTCTCGATCTGTCAAACAACTCTTTAACCG GAAGAATACCTCAGGATTTCGGATCCTCCGCTGCATTAGAGTTGCTGAATGTCTCATACAACAAGCTGCAAGGGCCAGTCCCTGAGAACGGTATGTTGAG AACAATCAACCCGAATGATCTTGCTGGCAATGTCGATCTCTGTGGAGGTTCTTTACCTCCATGTGACCACAGTTCGCTGATTGGATCCCGGCAGCAGCAG ATCAGCGCACGAAAGAAGCACATAATTGCGGAATGGATCATCGGAATCTCTTCAGTTTCAGCACTCGCGATGGCGCTCGTTTTTGCTTGGTCTCTCTACC AACGATGGTATCTGAACGGCAGTTGTTTCGAAGAGAGCCTTGAAATGGGGAATGGAGAGTGGCCATGGAGGCTGCTGGCTTTCCAGAGGCTTGGTTTCAC GAGTTCCGACATTCTCGCCTGCATCAAGGAATCGAATCAGATCGGAATGGGAGCGACTGGAACAGTCTACAAGGCGGAAATACCTCGAGTAAGCACAGTT GTCGCGGTGAAAAAGCTGTGGAGATCAACTAGAGATCTCGAAGTGGGAGCATCAGGGGATTTCGTCAGTGAGGTGAATCTGCTGGGGAAACTGAGGCACA GAAACATCGTTCGTCTACTAGGTTTTCTGCACAATGACACGGAGATGATGATCCTATACAAGTATATGCAAAATGGCAACCTTGGAGATTGCTTGCACGG CAAGCAATCCGAGAGGTTGTTGGTTGATTGGGTCTCAAGGTATAATATAGCACTAGGAGTAGCGCAGGGACTTGCATACCTACACCATGACTGTCACCCC CAGGTGATTCATCGAGATATCAAGTCGAACAACATACTCCTCGATGCAAATTTGGACGCCAGAATTGCAGATTTCGGGTTGGCCAGGATGATGCTTCGAC AGAACGAGACGGTTTCCATGGTTGCCGGTTCATATGGATACATAGCACCAGAGTATGGATATACCTTGAAGGTTGATGAGAAGATTGACATTTACAGCTA CGGAGTGGTCCTTTTAGAATTGATAACCGGAAAGAAGCCACTAGATCCCGAGTTCGGGGAATCTGTGGACATCGTTGATTGGATTAGAACGAAGATTAGA AACAACAGATCATTAGAAGAAGTCCTAGATGAGAGCGTAGGAAACTGCAAGCATGTTCAAGAAGAGATGCTGTTAGTTCTTAGAATAGCACTTCTCTGCA CAGCAAAACTTCCCAAAGATAGACCGTCGATGAGAGATGTAATGACAATGTTAGGAGAGGCAAAACCAAGAAGGAAAAGCAGTAGCATCAGCAATAATGG AAGCAATACTAACAAAGACAAGAAGCCAGTCTTCAGTACGTCACCTGTAAATGGCCTTCTTTAG
AA sequence Show only first row Show all	>Lus10025943 pacid=23173148 polypeptide=Lus10025943 locus=Lus10025943.g ID=Lus10025943.BGIv1.0 annot-version=v1.0 MPQKKYLFFFFLFSFGLFANLAIADDEVSALWAIKHGVSDPLNSLQDWKLSSNHCNWTGVRCNVNGKVESLDLSHMNLSGMVSDEIWKLQSLTSLNLCCN GFSSTLTQSLSNLTALRSIDVSQNLFSGAFPTGFGSSSSVLTWLNASSNNFSGPIPDDLGRGASSLLEALDLRGNFFQGEIPVSLAGLKKLKFLGLSGNN LTGFLPAELGQLSSLERLIIGYNEFDGGIPAEFGNLTNLMYLDLAVGNLSGEIPAELGNLKMVETVFFYQNNFEGRIPPSIGSMSSLQLLDLSENFLSGE IPSEIGLLKNLQLLNVMCNQLSGSVPETLGNLPQLQVLELWNNSFSGSLPSDLGGESPLQWVDVSSNSFSGPIPASLCNAGNLTKLILFNNGFSGPVPAS LSSCQSLVRVRMQNNLLTGTIPVGFGSLGKLQRNNLRSYLPSTILSIPNLQSFMASGNNLEGEIPGQFQGCPALSILDLSSNNFSGTIPASIASCERLVN LNLNNNQLYGEIPESISRMPTLAILDLSNNSLTGRIPQDFGSSAALELLNVSYNKLQGPVPENGMLRTINPNDLAGNVDLCGGSLPPCDHSSLIGSRQQQ ISARKKHIIAEWIIGISSVSALAMALVFAWSLYQRWYLNGSCFEESLEMGNGEWPWRLLAFQRLGFTSSDILACIKESNQIGMGATGTVYKAEIPRVSTV VAVKKLWRSTRDLEVGASGDFVSEVNLLGKLRHRNIVRLLGFLHNDTEMMILYKYMQNGNLGDCLHGKQSERLLVDWVSRYNIALGVAQGLAYLHHDCHP QVIHRDIKSNNILLDANLDARIADFGLARMMLRQNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELITGKKPLDPEFGESVDIVDWIRTKIR NNRSLEEVLDESVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVMTMLGEAKPRRKSSSISNNGSNTNKDKKPVFSTSPVNGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28650			Leucine-rich repeat transmembr...		Lus10025943 [exp]	0	1
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	5.4	0.9425
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	7.7	0.9339
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	8.0	0.9352
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	11.7	0.9345
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	14.2	0.8798
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	15.7	0.9231
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	18.8	0.9275
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	21.0	0.9187
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	21.2	0.9206
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	22.4	0.9208

Compare expression of checked genes

Lus10025943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.