Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20310 141 / 5e-37 RIN13 RPM1 interacting protein 13 (.1) AT4G28690 124 / 9e-31 unknown protein AT4G27660 103 / 2e-25 unknown protein AT5G54150 94 / 2e-22 unknown protein AT5G54148 79 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014249 [exp] 877 / 0 AT2G20310 141 / 7e-37 RPM1 interacting protein 13 (.1) Lus10000498 [exp] 179 / 6e-50 AT2G20310 124 / 1e-30 RPM1 interacting protein 13 (.1) Lus10032928 [exp] 99 / 8e-24 AT4G27660 122 / 4e-35 unknown protein Lus10015578 [exp] 83 / 2e-18 AT4G27660 111 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255400 [exp] 253 / 2e-77 AT4G28690 138 / 2e-35 unknown protein Potri.012G006501 [exp] 101 / 5e-25 AT4G27660 122 / 2e-35 unknown protein Potri.015G003200 [exp] 97 / 3e-23 AT4G27660 117 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025944 pacid=23173112 polypeptide=Lus10025944 locus=Lus10025944.g ID=Lus10025944.BGIv1.0 annot-version=v1.0 ATGGCGATGGATCCTTCTCCGTTAATCTTCGATATCAGCTCCGATGAGGAGACCCCCGCATTCAATGATCTGAGTGGTGGGGACGATGATCACAATTGGT TGTCGGAAATTCTTCAGAAGGTTAATCAAGAGACGGATGATTCCGATGATGTGGTGGTGGTCGGAGAGTATAACCCTTCAAAGCCAAAGTTGTCGACCTC CAAGTCGTCGGAACCGTTGAAGAATTTCGAGGATGATGATTGCGTGATTTTGGATGGTGACCCGGATAAGCCGGAAGAGGCTGCGGAGAACAACGCAGCC GATGACGAGGATGATGTGCTTGTTGTGGGCGAGACGGGGCAGGTTGCTTGCAGAGATTATCCACATTCTCGCCATCTCTGTCTCAAATTTCAATTCAGTT CTACCCTACACACTGAGCATTGCAGCCTGTGTCACTGTTATGTCTGCGATTCTCCTGCTCCATGTGCATATTGGGGTACTGGGCTCTCCAGTACTGATCA TTGTCATGCTACAGATAAACAGCAATCATGGAAAACTATGAGGGAAAGTTCCAGGAGGGACAAAGATGGTTCAGTAACCGTCTCAAGCGCTCCAAATTCT CTTCAAAAGGCTGTGACCCAACTTAATGAGATCGTCCATTTCGAAAATATTATACAGTTGACGTCCAATATTGAAGCACATACTCAGGTTACCCGGCCAA CTACAGTCCGAGCTTGCTCAACTTTTGGTGCTTTACCAAATATCATAAGTCGGAGCAGAACTCCACAGAGAGGGTATACTCCCCGAATTCCACAGCCAGT ACTTGGTGCGCGGCATAAGAATATGTTACGGCGAGCTAGATCTCAAAATGACAATTTTAGCCGACAATTTATCTCCGATGCAATGATGAAGAATAAGACG TTTGGTGGTGTTGGTTTCATGACCAATGAAGCTCAGTATGGCACTTCCAATAACATGAACAATGTTTCTGGTGCAGCATATGCAAGGAATCTCATTCCAT TTGAGCAACAGAATGCTGTACCGGAGATGGTTAATATGAGTTCTATCGTGCCATCCCAACCAGACGTTACTGCTGTTGCAAGTGCTCTTGCCTCCTTATC TGAGGTATGCCCCCAACCGGTTTATCAACCAACCAACAGTCAAAATGTATGGAAGCTTGACAATCAAACTACTGATCCTACAAGCTCAGATTTCAACCTC AGGTGGGTTGATAATGTGAGCACTCAGCAAAGTTCAGTTGATAATATCTACCTTAGTGGCACGATGAATAATGTGGAAAACTCAAGGGTTGATCAGTGTG GTTCTCAGTTTCCTGGTAGTTTCCAGCAACCTTACCAGGATGATAATTATGGTATATGGAGTTCGGGGCAATCTGTTCATAACGCAGCAGAATGTGTATC TTCTGATGTTGGTATATTTTCTCCTGAACCTGCTGTGTTAGACGCCGGTGTACTTGGTAACTACTTCGATCCTTCCTGGCGTGGGTCGACGAGTTTTCCA CCGTAG
AA sequence Show only first row Show all	>Lus10025944 pacid=23173112 polypeptide=Lus10025944 locus=Lus10025944.g ID=Lus10025944.BGIv1.0 annot-version=v1.0 MAMDPSPLIFDISSDEETPAFNDLSGGDDDHNWLSEILQKVNQETDDSDDVVVVGEYNPSKPKLSTSKSSEPLKNFEDDDCVILDGDPDKPEEAAENNAA DDEDDVLVVGETGQVACRDYPHSRHLCLKFQFSSTLHTEHCSLCHCYVCDSPAPCAYWGTGLSSTDHCHATDKQQSWKTMRESSRRDKDGSVTVSSAPNS LQKAVTQLNEIVHFENIIQLTSNIEAHTQVTRPTTVRACSTFGALPNIISRSRTPQRGYTPRIPQPVLGARHKNMLRRARSQNDNFSRQFISDAMMKNKT FGGVGFMTNEAQYGTSNNMNNVSGAAYARNLIPFEQQNAVPEMVNMSSIVPSQPDVTAVASALASLSEVCPQPVYQPTNSQNVWKLDNQTTDPTSSDFNL RWVDNVSTQQSSVDNIYLSGTMNNVENSRVDQCGSQFPGSFQQPYQDDNYGIWSSGQSVHNAAECVSSDVGIFSPEPAVLDAGVLGNYFDPSWRGSTSFP P

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10025944 [exp]	0	1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	7.1	0.7741
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	10.6	0.7741
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	18.3	0.7212
AT3G18770			Autophagy-related protein 13 (...		Lus10006790 [exp]	19.4	0.7350
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	21.6	0.7474
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	24.1	0.7409
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	24.1	0.7309
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	24.4	0.7441
AT3G50910			unknown protein		Lus10014290 [exp]	25.1	0.7481
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	26.6	0.7487

Compare expression of checked genes

Lus10025944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.