Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04130 387 / 1e-133 TPR2, AtTPR2 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56440 56 / 4e-08 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G04190 54 / 9e-08 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62740 51 / 1e-06 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 47 / 2e-05 Hop1 Hop1, stress-inducible protein, putative (.1) AT3G17970 44 / 0.0001 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT2G42810 44 / 0.0002 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G12400 44 / 0.0002 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014250 [exp] 588 / 0 AT1G04130 391 / 2e-135 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032234 [exp] 54 / 2e-07 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10006559 [exp] 52 / 3e-07 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10003260 [exp] 52 / 7e-07 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10024597 [exp] 52 / 8e-07 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10021905 [exp] 50 / 2e-06 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041189 [exp] 49 / 3e-06 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018004 [exp] 47 / 2e-05 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10004336 [exp] 47 / 2e-05 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255300 [exp] 455 / 2e-160 AT1G04130 470 / 5e-167 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 54 / 5e-08 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G008400 [exp] 52 / 4e-07 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 51 / 7e-07 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G156500 [exp] 49 / 2e-06 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G046900 [exp] 44 / 0.0001 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 43 / 0.0003 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G119500 [exp] 43 / 0.0003 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G205300 [exp] 42 / 0.0005 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025945 pacid=23173190 polypeptide=Lus10025945 locus=Lus10025945.g ID=Lus10025945.BGIv1.0 annot-version=v1.0 ATGGCGTTGTTGATGGAGAAAGGATCCGAACCCACCACCGAGTCGGAGATTTTTGACCTCGACGCAATCTCCGCTCTCAAACAGTCTTCTGCTATCGAGC TCAAGGAGGAAGGTAACAAGTATGTCAAGATGGGGAAAAAGCATTATTCTGATGCGATTGACTGCTACACTAGGGCAATCAACCAGAAAGCCCTGAGTGA TTCCGAGACCTCTCTTCTTTACTCCAATAGAGCTCATGTTAATCTGCTTCTTGGAAACTATAGACGCTCTTTGACAGATGCTGAAGAAGCAATTAAGCTC TCCCCCAGTAATGTGAAGGCGTTTTATCGGGCTGCCAAAGCTTCTTTGTCTTTAAATCTGTTGAGCGAGGCAAAATCATTCGGCGAGAAAGGGCTAGAGC TAGATTCGAGTAATGTAGAGCTGGATAAACTAGTTACGCAGATAGGTGATCTGAAGTTGCAACAGGATAAGCGGGAGTCTGAAGTCAACGATGCTGTAGC AGAAGCTAAGGAACTTGTTTCCGCTTTTGAAACCAGAGGATTAAAGATGGGAGTTGCTATGTATCGAGAACTCACTGGATTGAGGAAACCTCTATTAGAT AAGAATAAACTTCTGCATTGGCCAGTTCTTCTCCTCTATGCCGAGGTTATGTCCAGCGACTTCATTGAAGACTTCTGCGAGATAGACATGTTCTCCACCC ATCTTGATATGATATCCTTTCCTGAAACGGAAAGTTACCCGCCCTTGGATTGGGATACAGAAAATAACTACACTCGCGAAGCTATTGAGCTATATTATGA GGCAGGTTCTGGGGGTCGTCTTCCGAAGGCTAAAGTGCTTAAATACCTGCTAGAAGGAACTGCAGGTGCTAATCTAGAGAGTGAAAAAGACGAGAAGGAT ACAACTGAGATTGTCTCGGGAGGAAAAACCCATAGCAGGTGGGTCAAAGTGGATGAAAAGAGAAAGCTTATTGATGTGATGAAAGAAGCTGACTTCATCA TCCCAGGGATCCCAGGTGCCTCATCAAGCGGCATCAGTGGTGGCAGACGTATTGGCAGTGCTGAATTCATCGTCCTCACTACTGGAAACAAGCACTTATG GAAGACTGCAACTCTTTTATTTGTGATTATGCCTCACACGGGGATAGCAGTGTTCCTAATCCGGAGTTATTACCAATAG
AA sequence Show only first row Show all	>Lus10025945 pacid=23173190 polypeptide=Lus10025945 locus=Lus10025945.g ID=Lus10025945.BGIv1.0 annot-version=v1.0 MALLMEKGSEPTTESEIFDLDAISALKQSSAIELKEEGNKYVKMGKKHYSDAIDCYTRAINQKALSDSETSLLYSNRAHVNLLLGNYRRSLTDAEEAIKL SPSNVKAFYRAAKASLSLNLLSEAKSFGEKGLELDSSNVELDKLVTQIGDLKLQQDKRESEVNDAVAEAKELVSAFETRGLKMGVAMYRELTGLRKPLLD KNKLLHWPVLLLYAEVMSSDFIEDFCEIDMFSTHLDMISFPETESYPPLDWDTENNYTREAIELYYEAGSGGRLPKAKVLKYLLEGTAGANLESEKDEKD TTEIVSGGKTHSRWVKVDEKRKLIDVMKEADFIIPGIPGASSSGISGGRRIGSAEFIVLTTGNKHLWKTATLLFVIMPHTGIAVFLIRSYYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	0	1
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	4.5	0.8051
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Lus10026853 [exp]	5.8	0.8063
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	9.0	0.7728
AT2G35900			unknown protein		Lus10021249 [exp]	11.1	0.8006
					Lus10009043 [exp]	11.5	0.7616
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	11.5	0.7990
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	11.6	0.7838
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	12.4	0.7647
AT3G54680			proteophosphoglycan-related (....		Lus10033654 [exp]	13.0	0.7321
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	17.6	0.7722

Compare expression of checked genes

Lus10025945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.