Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10700 511 / 0 GalAK galacturonic acid kinase (.1) AT3G06580 53 / 2e-07 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014251 [exp] 773 / 0 AT3G10700 510 / 9e-180 galacturonic acid kinase (.1) Lus10016320 [exp] 53 / 2e-07 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 49 / 7e-06 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10037789 [exp] 48 / 1e-05 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 45 / 0.0001 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 44 / 0.0002 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070500 [exp] 551 / 0 AT3G10700 555 / 0.0 galacturonic acid kinase (.1) Potri.010G148100 [exp] 50 / 2e-06 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 49 / 5e-06 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025946 pacid=23173183 polypeptide=Lus10025946 locus=Lus10025946.g ID=Lus10025946.BGIv1.0 annot-version=v1.0 ATGGCGGAAGTTTCTTGGCCTAGTGAAGCTGAGGTGAATAAAATCAGGAATGTGGTTTCTTCAATTTCTGGGAGTGACCCTAGTGAAGTTAGAGTTGTGG TCTCTCCTTACCGTATATGTCCCCTGGGTGCTCATATCGATCACCAGGGTGGATCTGTTACCGCTATGACGATTAACCGGGGTATACTGCTGGGTTTTGT TCCCTCCCTTGATACAAAGGTTGTGTTACGTTCAGGACAGTTTGAAGGCGAAGTTTGTTTCAGTGTTGATGAAATTCAGCATCCACTTCACAGTAGTAAA CAATATGCAAACCATACAACTGATTCGTCAAATCATCAGGAACATAGTCAATGGGGAAAGTTTGCAAGGGGAGCTGTCTTTGCCCTGCAGAAGACAGGAT ATTCTCTTACAAGAGGGGTTACTGGATTTATATGTGGGTCTGAGGGCCTTGATAGTGCAGGACTTAGCTCGTCCGCTGCTGCTGGAGTTGCTTATCTGCT GGCCTTTGAGAGTGCAAACAACTTAACCATGTCCCCGGTGCAAAATATTGAATTTGACAGGCTGATTGAGAACGAATATCTGGGTCTGAAAAACGGCATA TTGGACCAGTCAGCAATATTGCTGTCAAGCCGTGGCTGCTTAACTTACATGAACTGCAAGACCAAAGAACACAAGATTGTACGCCCATTCAAATCGCAGA TAGATGGTCAAAGTGATTTGCAGAAATCATTCAAGATACTGGTGGCATTTTCAGGCTTAAGGGAAGCTTTGACCAGTGGCTCTGGTTACAACCGCCGAGT TTCAGAATGTCAAGAGGCTGCAAGGGTTCTACTCAACTATGATATTCACTCAATCTGTCGTTTTCAAGCAGTTGAACAAAAGGCATATCAAATGCACAAG GACAAGTTGGAAGGTGATCTAGCCAAACGAGCAGAGCATTATTTCTCGGAAAATATGCGGGTAAATAAAGGAATTGAAGCTTGGACCTTGGGCGATTTGG AAGAATTCGGGAAGCTTATTTCGGCCTCAGGTTTAAGCTCCATAAAGAACTACGAATGCGGTTGCGAGCCACTGATACAACTGTACGAGATAGTGGTGAA GGCGCCCGGAGTTTACGGAGGAAGGTTCAGTGGTGCTGGCTTCAGAGGATGCTGCATTGCACTTGTTCGCCCTCACTTGGCTGATGAAGCTGCTGCCTTC GTGAAATCGGAATACTCCAACGCACAGCTTCAACTTGCTTCACAACTCAACCCGGCGGCCGCCGTTTTGATCTGTGAACCAGCCAACGCAGCTCGTATCA TCATGAACTCTTCCTTTGCTGCAATATAA
AA sequence Show only first row Show all	>Lus10025946 pacid=23173183 polypeptide=Lus10025946 locus=Lus10025946.g ID=Lus10025946.BGIv1.0 annot-version=v1.0 MAEVSWPSEAEVNKIRNVVSSISGSDPSEVRVVVSPYRICPLGAHIDHQGGSVTAMTINRGILLGFVPSLDTKVVLRSGQFEGEVCFSVDEIQHPLHSSK QYANHTTDSSNHQEHSQWGKFARGAVFALQKTGYSLTRGVTGFICGSEGLDSAGLSSSAAAGVAYLLAFESANNLTMSPVQNIEFDRLIENEYLGLKNGI LDQSAILLSSRGCLTYMNCKTKEHKIVRPFKSQIDGQSDLQKSFKILVAFSGLREALTSGSGYNRRVSECQEAARVLLNYDIHSICRFQAVEQKAYQMHK DKLEGDLAKRAEHYFSENMRVNKGIEAWTLGDLEEFGKLISASGLSSIKNYECGCEPLIQLYEIVVKAPGVYGGRFSGAGFRGCCIALVRPHLADEAAAF VKSEYSNAQLQLASQLNPAAAVLICEPANAARIIMNSSFAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	0	1
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	1.7	0.9407
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	2.8	0.9295
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10014251 [exp]	3.7	0.9131
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	8.4	0.9061
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	9.2	0.9283
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10033156 [exp]	9.9	0.9294
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10029129 [exp]	11.7	0.9147
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	15.2	0.9001
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	15.4	0.9031
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	16.3	0.9014

Compare expression of checked genes

Lus10025946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.