Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43610 49 / 1e-06 Chitinase family protein (.1) AT2G43570 42 / 0.0002 CHI "chitinase, putative", chitinase, putative (.1) AT3G54420 42 / 0.0003 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43620 40 / 0.0007 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014253 [exp] 71 / 5e-15 AT2G43570 46 / 1e-06 "chitinase, putative", chitinase, putative (.1) Lus10020338 [exp] 51 / 6e-08 AT2G43620 57 / 2e-10 Chitinase family protein (.1) Lus10001772 [exp] 49 / 3e-07 AT2G43610 44 / 5e-06 Chitinase family protein (.1) Lus10020253 [exp] 49 / 4e-07 AT2G43610 54 / 4e-09 Chitinase family protein (.1) Lus10001773 [exp] 45 / 2e-05 AT2G43570 51 / 6e-08 "chitinase, putative", chitinase, putative (.1) Lus10041830 [exp] 40 / 0.001 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125000 [exp] 47 / 6e-06 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G142300 [exp] 42 / 0.0004 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 41 / 0.0004 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.019G093700 [exp] 41 / 0.0005 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 40 / 0.0007 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Lus10025948 pacid=23173193 polypeptide=Lus10025948 locus=Lus10025948.g ID=Lus10025948.BGIv1.0 annot-version=v1.0 ATGGAAGTAATCAAGATCAATCTGCCTCTCATATCTCTAATCATAACTTTAACAATGGTCAGTGCTCGCAATTTCAGCTCATCTCAGGTCACTATTCCTA CCGCCGCCGAACAAGACCATGTGCCTCCGGCGGCCGGCTGGTGGGCGATCATCGACCGCCGATATCGCAACTCTTCCGCCGCTCGTGTCCTCGGAGACGA AAAGTACAACGACCCTGGCTGCGGCCCCAAAGGCCACAACGGACATTGTGACGATGACCTATGTTGTAGCCGGTGGGGCTACTGCGGTAGTAGTAAGAAA TACTGTGGTGACGGCTGCCAACCGAAATTTGGCCGTTGTCACCCTCATGGAGGAGGAGGCGGTGTTCAGCCGCCGATGCATAACCACGTGCCGCCCCCGA TGGAGAGCCAAAAGCCGCCTCCAAAGCAGAACCACAAGCCGCCTCCAAAGCAGAGCCACAAGCCGCCTCCGAAGCACAAGCACGTGCCACCTCCAAAGCC GAGCCATGTTCCGCCTCCGGTTGAAAGCCCGCCGCCTTGTTCGTGTCAGGACTCGACGACCACTTCATCGTCGGCTCACACCGCCGGCGATGACAACAAA TATAACAATCCTAGTTGCGGCAGGGAGGGCCACCATGGAACATGTAGAGACGGACTTTGTTGCAGTAAGTACAGCTTTTGCGGATATACTGATAAATATT GTGGTGACGGATGTCAACATGGTTACGGCAAATGCGGCGGAGGAGGAGGTGGGAGCCACCACAGTCCTCCGCCTGCTCCCGATGACGATAGTCCTCCTCC TTCTCCTTGTACTTGCGACTAA
AA sequence Show only first row Show all	>Lus10025948 pacid=23173193 polypeptide=Lus10025948 locus=Lus10025948.g ID=Lus10025948.BGIv1.0 annot-version=v1.0 MEVIKINLPLISLIITLTMVSARNFSSSQVTIPTAAEQDHVPPAAGWWAIIDRRYRNSSAARVLGDEKYNDPGCGPKGHNGHCDDDLCCSRWGYCGSSKK YCGDGCQPKFGRCHPHGGGGGVQPPMHNHVPPPMESQKPPPKQNHKPPPKQSHKPPPKHKHVPPPKPSHVPPPVESPPPCSCQDSTTTSSSAHTAGDDNK YNNPSCGREGHHGTCRDGLCCSKYSFCGYTDKYCGDGCQHGYGKCGGGGGGSHHSPPPAPDDDSPPPSPCTCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10020713 [exp]	1.7	0.9203
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	6.0	0.9100
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	6.9	0.9149
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	7.3	0.9236
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	8.8	0.9010
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	13.0	0.8767
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	13.0	0.8632
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	13.6	0.9187
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	17.9	0.9208
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	19.1	0.8509

Compare expression of checked genes

Lus10025948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.