Plant FIBer expression Database

Lus10025950 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17705 202 / 2e-68 unknown protein
AT4G08330 49 / 7e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018170
[exp]
54 / 8e-10 AT4G08330 163 / 6e-52 unknown protein
Lus10025667
[exp]
54 / 1e-09 AT4G08330 166 / 5e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G107700
[exp]
190 / 1e-63 AT2G17705 197 / 9e-67 unknown protein
Potri.005G070600
[exp]
67 / 5e-15 AT4G08330 105 / 3e-29 unknown protein
Potri.002G083600
[exp]
51 / 1e-08 AT4G08330 106 / 1e-29 unknown protein
Potri.014G197000
[exp]
50 / 1e-08 AT4G08330 113 / 4e-33 unknown protein
Potri.005G178000
[exp]
49 / 3e-08 AT4G08330 138 / 3e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10025950 pacid=23173177 polypeptide=Lus10025950 locus=Lus10025950.g ID=Lus10025950.BGIv1.0 annot-version=v1.0
ATGGCTCCCGTCTACTGCTGCGCAGAGTGCGGAACGGACCTTCATCTGAGTCCACAAGATCTATACCCGCCTGATTTCTACTTCGAGGCTGGCAACAAAG
GCTCGCTCTCTTTCTCCTCAATCGACACTGCCAGATTCAGCTTTGAGAAGGAGGACAAGCTCAGGCCTTTCTTCGAGACAATCAATTACTGGGGCATCCA
GAGGACGCGGACGAAGATCAACTGCTTCAACTGCGGCCGCCTTCTCGGCTACATCTACGACGACGGCCCTCCTCTCACCGGCGGCACCGGTCAGTTCCAC
ATGGGACCCAGCCAGGTCATTCCTCGGGCACCCAGGTACCGTTTCAAGACCAAGGCCATTCAGATCAACTCTTGA
AA sequence
>Lus10025950 pacid=23173177 polypeptide=Lus10025950 locus=Lus10025950.g ID=Lus10025950.BGIv1.0 annot-version=v1.0
MAPVYCCAECGTDLHLSPQDLYPPDFYFEAGNKGSLSFSSIDTARFSFEKEDKLRPFFETINYWGIQRTRTKINCFNCGRLLGYIYDDGPPLTGGTGQFH
MGPSQVIPRAPRYRFKTKAIQINS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17705 unknown protein Lus10025950
[exp]
0 1
AT1G65520 PEC11, ECHIC, A... "delta\(3\), delta\(2\)-enoyl ... Lus10005158
[exp]
3.9 0.9461
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Lus10025741
[exp]
8.0 0.9221
AT5G60600 HDS, ISPG, CSB3... CONSTITUTIVE SUBTILISIN 3, CHL... Lus10021480
[exp]
8.5 0.9432
AT2G21620 RD2 Adenine nucleotide alpha hydro... Lus10042316
[exp]
8.7 0.9286
Lus10038520
[exp]
11.1 0.9294
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10040271
[exp]
12.1 0.9230
AT3G56770 bHLH bHLH107 basic helix-loop-helix (bHLH) ... Lus10038306
[exp]
12.2 0.9036
AT1G33030 O-methyltransferase family pro... Lus10009442
[exp]
13.3 0.9207
AT5G53390 O-acyltransferase (WSD1-like) ... Lus10014075
[exp]
18.0 0.9197
AT4G09670 Oxidoreductase family protein ... Lus10005674
[exp]
19.5 0.9213

Lus10025950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.