Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35890 234 / 1e-70 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 171 / 6e-48 winged-helix DNA-binding transcription factor family protein (.1) AT5G21160 92 / 1e-19 LA RNA-binding protein (.1.2.3) AT3G19090 54 / 1e-07 RNA-binding protein (.1) AT2G43970 53 / 3e-07 RNA-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025953 [exp] 716 / 0 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10014254 [exp] 709 / 0 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10014255 [exp] 218 / 1e-66 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10025954 [exp] 119 / 3e-32 ND 43 / 7e-06 Lus10025952 [exp] 102 / 2e-25 AT4G35890 54 / 8e-09 winged-helix DNA-binding transcription factor family protein (.1) Lus10041277 [exp] 97 / 9e-21 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 82 / 3e-16 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10038494 [exp] 63 / 2e-10 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 63 / 2e-10 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063600 [exp] 366 / 2e-121 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G109400 [exp] 343 / 3e-112 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 154 / 3e-41 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.009G018100 [exp] 122 / 3e-29 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 116 / 2e-27 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.011G080700 [exp] 68 / 3e-12 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.007G144800 [exp] 56 / 3e-08 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 56 / 4e-08 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.004G144700 [exp] 50 / 2e-06 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 47 / 2e-05 AT3G19090 348 / 1e-116 RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10025951 pacid=23173288 polypeptide=Lus10025951 locus=Lus10025951.g ID=Lus10025951.BGIv1.0 annot-version=v1.0 ATGGAGGATAGCGGCCATCAGCTGAACAGTCCGCATTCCCGCCGTTCTGGCAAGAACATGGTTGTTTCTTCACCTTGGAATCAAGTTGTTAGGGGAGAGT CGGAATCTAACTCCGTGGCTCCTCCTCTGTCGCCTTCCGCCGCTTTTTCTTCTCCTACAGCCGTTCCCGACCAAGTAGTCCTGGGATCGGTTTCCTCCGA TGAGGAGATCTCCAATGGCAATGCTGGTAAGAGGCCAGTTTGGAATATGCCGTCTAATGGTGCTCTAGAGATTGGACCTGTTATGGGAGCTGTTGCCTGG CCTGCTTTATCCGAGGCCGCTAGGGTTTCCTCTAAATCTCCTCAGCCCGACGGATCATCTACCCTGCCTTTGTCGTCGGGAAGTGGAACTGCATCTTCCT CTCCTAGGAAACATGTCAATAATGCAACCCCTAATTCAACCCCAAATCATACAGCTCCAGCTCGCCAAAGATCATTTAATAAGCAGCGTAATGGTGCATC CTCTTCGGATGCTAGCTCTCCTCAGCAAATAGCATCACAGGGGCATGCAGGGGAGAGTCATTTGAATAACCCTTCTCCGAGGGAACATACCCAAAGAAGC TCTCAAGCCCGCAACTCTAATGATCATTCAGGGCAGCCGCGCAATACATTTAGAAACCGTAATGGTGGGACACATCCTCGGGCAGATGGCTCTTATAATC ATAATTATGGAGGTAGGCGCGATCATGATCGTGGAAATCAGGATTGGAACTCTAATAGGAATTTCAATGGCAGAGATGGGCATGTGCAGCCACAAAGAGT TGCGCCGAGGTTCATGAGGCACCAACCTCCTCCTCTTCCTCCTCCTGCTTCTACACCTTTCATAGCAGCACCACCTGTCAGGGCTTTCGGTAGTCCCATG GGTTTCCCTGAATTGGCTTCTCCTATGTACTATGTTGCACAACCTCCACCAAATATGAGAGGAATGCCCTTTCTGGCTGCACCGATGCCACCTCATGCAG TATTTTTCCCACCACCAGACTTCCAGTTGCATTCCAAAATAGTGACTCAGATAGATTACTATTTTAGCAATGACAATTTGATCCGGGACACCTATTTGCG ACAAAATATGGATGAACAGGGCTGGGTACCCATTAACTTAATTGCAGGCTTCAAAAAAGTTTCACAACTTACAGATAGTATTCCACTGATATTGGATGCT TTAAGGAGTTCTTCCATTGTCGTGGAAGTGCAGGGTGACAAAGTAAGACGGAGGACCGACTGGATGAGGTGGTTGTTGAAGCCATCTCAGGTCCCAAGTG TGACAAGCTCTCAGGGAGTGGGCGAGTCCAGCAACCAAGACACGATTTCCGATAAATTGCAGAGCATGTCTTTGGAAGACAAGGTGACTGGGTCTGGGCA GAGCCAAAGTACATCTACATCTGGTGATTTTAATAGCTATGAAGAAGGCACAAGTCGAGTTGGTCAGGATGGAGATTTGGATGGATAA
AA sequence Show only first row Show all	>Lus10025951 pacid=23173288 polypeptide=Lus10025951 locus=Lus10025951.g ID=Lus10025951.BGIv1.0 annot-version=v1.0 MEDSGHQLNSPHSRRSGKNMVVSSPWNQVVRGESESNSVAPPLSPSAAFSSPTAVPDQVVLGSVSSDEEISNGNAGKRPVWNMPSNGALEIGPVMGAVAW PALSEAARVSSKSPQPDGSSTLPLSSGSGTASSSPRKHVNNATPNSTPNHTAPARQRSFNKQRNGASSSDASSPQQIASQGHAGESHLNNPSPREHTQRS SQARNSNDHSGQPRNTFRNRNGGTHPRADGSYNHNYGGRRDHDRGNQDWNSNRNFNGRDGHVQPQRVAPRFMRHQPPPLPPPASTPFIAAPPVRAFGSPM GFPELASPMYYVAQPPPNMRGMPFLAAPMPPHAVFFPPPDFQLHSKIVTQIDYYFSNDNLIRDTYLRQNMDEQGWVPINLIAGFKKVSQLTDSIPLILDA LRSSSIVVEVQGDKVRRRTDWMRWLLKPSQVPSVTSSQGVGESSNQDTISDKLQSMSLEDKVTGSGQSQSTSTSGDFNSYEEGTSRVGQDGDLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35890			winged-helix DNA-binding trans...		Lus10025951 [exp]	0	1
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	2.4	0.9349
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	4.0	0.9377
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	10.1	0.9322
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	10.5	0.9276
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	13.0	0.9203
AT4G16180			unknown protein		Lus10017062 [exp]	13.7	0.9146
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	14.1	0.9107
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	19.1	0.9211
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	20.9	0.9290
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	23.5	0.8981

Compare expression of checked genes

Lus10025951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.