Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35890 49 / 3e-07 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 40 / 0.0002 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014255 [exp] 91 / 2e-22 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10014254 [exp] 91 / 4e-22 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10025951 [exp] 90 / 2e-21 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10025953 [exp] 89 / 3e-21 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109400 [exp] 52 / 3e-08 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.007G063600 [exp] 49 / 3e-07 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025952 pacid=23173188 polypeptide=Lus10025952 locus=Lus10025952.g ID=Lus10025952.BGIv1.0 annot-version=v1.0 ATGGCTGGTTCGTCCCCTTGGAATCAAGTTGGTAGGGGAGAGTTGGAATCTATCTCGGTGGCTCCTCCACCTTTGTCGCCTTCTGCCGCTGTCTCTTCTC ATACAGCCATCTCCGACCAAAGACCAGTCTGGAATATGCCGTCTAATGGTGCTCTAGAAATTGGACCTGTTATGGAAGCTGTTGCCTGGCCTGCTAGGGT TTCCTCTAAATTCCTCAGCCAGATGGATCATCTAAGCTACCTTTGTCGGCGTGATCATGATCGTGGGAATCAAGATTGGAATTCTCATAGGAATTTCAAT GGTCGGGACGGGCATGTGCAACCACAGAGAATGGGGCCGAGGTTCATGAGGCACCCACCTTCTCCACCACCTCCTGCTTCTGCACCTTTCATAACATCCC CACCAGTTCGGGCTTTTGGTAGTCCCATGGGTTTCTTTGATACACAGGAGGAGGAGCCACCGAGTTAG
AA sequence Show only first row Show all	>Lus10025952 pacid=23173188 polypeptide=Lus10025952 locus=Lus10025952.g ID=Lus10025952.BGIv1.0 annot-version=v1.0 MAGSSPWNQVGRGELESISVAPPPLSPSAAVSSHTAISDQRPVWNMPSNGALEIGPVMEAVAWPARVSSKFLSQMDHLSYLCRRDHDRGNQDWNSHRNFN GRDGHVQPQRMGPRFMRHPPSPPPPASAPFITSPPVRAFGSPMGFFDTQEEEPPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	0	1
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	1.7	0.8464
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	3.0	0.7541
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042099 [exp]	3.7	0.6412
					Lus10038177 [exp]	6.3	0.7078
					Lus10003927 [exp]	8.1	0.6914
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	11.0	0.6301
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	11.8	0.8239
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	13.0	0.6465
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10042742 [exp]	16.1	0.7184
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10040741 [exp]	24.2	0.6419

Compare expression of checked genes

Lus10025952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.