Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35890 202 / 2e-59 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 151 / 5e-41 winged-helix DNA-binding transcription factor family protein (.1) AT5G21160 92 / 8e-20 LA RNA-binding protein (.1.2.3) AT3G19090 54 / 1e-07 RNA-binding protein (.1) AT2G43970 53 / 3e-07 RNA-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025951 [exp] 692 / 0 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10014254 [exp] 641 / 0 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10014255 [exp] 195 / 8e-59 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10025954 [exp] 119 / 9e-33 ND 43 / 7e-06 Lus10041277 [exp] 96 / 4e-21 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10025952 [exp] 89 / 5e-21 AT4G35890 54 / 8e-09 winged-helix DNA-binding transcription factor family protein (.1) Lus10037431 [exp] 82 / 2e-16 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10038494 [exp] 63 / 1e-10 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 62 / 2e-10 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063600 [exp] 324 / 3e-106 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G109400 [exp] 308 / 4e-100 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 142 / 2e-37 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.009G018100 [exp] 109 / 1e-25 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 108 / 4e-25 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.011G080700 [exp] 67 / 4e-12 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.007G144800 [exp] 56 / 2e-08 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 56 / 3e-08 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.004G144700 [exp] 50 / 1e-06 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 47 / 1e-05 AT3G19090 348 / 1e-116 RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10025953 pacid=23173114 polypeptide=Lus10025953 locus=Lus10025953.g ID=Lus10025953.BGIv1.0 annot-version=v1.0 ATGCCGTCTAATGGTGCTCTAGAGATTGGACCTGTTATGGGAGCTGTTGCCTGGCCTGCTTTATCCGAGGCCGCTAGGGTTTCCTCTAAATCTCCTCAGC CCGACGGATCATCTACCCTGCCTTTGTCGTCGGGAAGTGGAACTGCATCTTCCTCTCCTAGGAAACATGTCAATAATGCAACCCCTAATTCAACCCCAAA TCATACAGCTCCAGCTCGCCAAAGATCATTTAATAAGCAGCGTAATGGTGCATCCTCTTCGGATGCTAGCTCTCCTCAGCAAATAGCATCACAGGGGCAT GCAGGGGAGAGTCATTTGAATAACCCTTCTCCGAGGGAACATACCCAAAGAAGCTCTCAAGCCCGCAACTCTAATGATCATTCAGGGCAGCCGCGCAATA CATTTAGAAACCGTAATGGTGGGACACATCCTCGGGCAGATGGCTCTTATAATCATAATTATGGAGGTAGGCGCGATCATGATCGTGGAAATCAGGATTG GAACTCTAATAGGAATTTCAATGGCAGAGATGGGCATGTGCAGCCACAAAGAGTTGCGCCGAGGTTCATGAGGCACCAACCTCCTCCTCCACCTCCTCCT GCTTCTACACCTTTCATAGCAGCACCACCTGTCAGGGCTTTCGGTAGTCCCATGGGTTTCCCTGAATTGGCTTCTCCTATGTACTATGTTGCACAACCTC CACCAAATATGAGAGGAATGCCCTTTCTGGCTGCACCGATGCCACCTCATGCAGTATTTTTCCCACCACCAGACTTCCAGTTGCATTCCAAAATAGTGAC TCAGATAGATTACTATTTTAGCAATGACAATTTGATCCGGGACACCTATTTGCGACAAAATATGGATGAACAGGGCTGGGTACCCATTAACTTAATTGCA GGCTTCAAAAAAGTTTCACAACTTACAGATAGTATTCCACTGATATTGGATGCTTTAAGGAGTTCTTCCATTGTCGTGGAAGTGCAGGGTGACAAAGTAA GACGGAGGACCGACTGGATGAGGTGGTTGTTGAAGCCATCTCAGGTCCCAAGTGTGACAAGCTCTCAGGGAGTGGGCGAGTCCAGCAACCAAGACACGAT TTCCGATAAATTGCAGAGCATGTCTTTGGAAGACAAGGTGACTGGGTCTGGGCAGAGCCAAAGTACATCTACATCTGGTGATTTTAATAACTATGAAGAA GGCACAAGTCGAGTTGGTCAGGATGGAGATTTGGATGGATAA
AA sequence Show only first row Show all	>Lus10025953 pacid=23173114 polypeptide=Lus10025953 locus=Lus10025953.g ID=Lus10025953.BGIv1.0 annot-version=v1.0 MPSNGALEIGPVMGAVAWPALSEAARVSSKSPQPDGSSTLPLSSGSGTASSSPRKHVNNATPNSTPNHTAPARQRSFNKQRNGASSSDASSPQQIASQGH AGESHLNNPSPREHTQRSSQARNSNDHSGQPRNTFRNRNGGTHPRADGSYNHNYGGRRDHDRGNQDWNSNRNFNGRDGHVQPQRVAPRFMRHQPPPPPPP ASTPFIAAPPVRAFGSPMGFPELASPMYYVAQPPPNMRGMPFLAAPMPPHAVFFPPPDFQLHSKIVTQIDYYFSNDNLIRDTYLRQNMDEQGWVPINLIA GFKKVSQLTDSIPLILDALRSSSIVVEVQGDKVRRRTDWMRWLLKPSQVPSVTSSQGVGESSNQDTISDKLQSMSLEDKVTGSGQSQSTSTSGDFNNYEE GTSRVGQDGDLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35890			winged-helix DNA-binding trans...		Lus10025953 [exp]	0	1
AT4G37090			unknown protein		Lus10000742 [exp]	8.4	0.8332
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	16.3	0.8179
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	25.6	0.7955
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10029989 [exp]	51.3	0.7850
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	57.4	0.7805
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	58.9	0.7641
AT2G40510			Ribosomal protein S26e family ...		Lus10029042 [exp]	59.4	0.7846
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	71.5	0.7683
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	74.7	0.7628
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10015609 [exp]	75.6	0.7581

Compare expression of checked genes

Lus10025953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.