Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35930 286 / 2e-96 F-box family protein (.1) AT1G61340 59 / 2e-10 F-box family protein (.1.2) AT4G21510 53 / 3e-08 F-box family protein (.1) AT4G05010 51 / 9e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028422 [exp] 336 / 7e-117 AT4G35930 267 / 3e-89 F-box family protein (.1) Lus10041876 [exp] 335 / 2e-116 AT4G35930 265 / 3e-88 F-box family protein (.1) Lus10018432 [exp] 49 / 7e-07 AT4G21510 102 / 3e-27 F-box family protein (.1) Lus10011255 [exp] 49 / 1e-06 AT4G21510 114 / 1e-31 F-box family protein (.1) Lus10022370 [exp] 44 / 1e-05 AT4G21510 67 / 1e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110200 [exp] 372 / 6e-131 AT4G35930 332 / 4e-114 F-box family protein (.1) Potri.011G042800 [exp] 62 / 1e-11 AT4G21510 115 / 4e-32 F-box family protein (.1) Potri.004G034400 [exp] 61 / 3e-11 AT1G61340 127 / 2e-37 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025956 pacid=23173305 polypeptide=Lus10025956 locus=Lus10025956.g ID=Lus10025956.BGIv1.0 annot-version=v1.0 ATGGGGAAAGTGTCTCCGGATGATGGAAACGCAAATACGCCGAAGCAGAGGAGGCGATTGCGGAGTTCAAGTGGGAGGTACCTGAAGCCAGGGGCGCTTG CTCAACTGCGGTATGGGAAACCATCGGTGGCCAAGTCATGCACGGATCTAGCAAAGAAGAGGGTTGCTGTGCTTGAAACTGATGATGATACAGATACTCT TGCAATTGAAAGTAATGGGACTGCTGTTGATACAAGTCCCTTGATGATGTCCCCTGTGGGTGTGCTTAAACAGAATAATTTAGTGTCAACACCTAAGACG CCTCGTGTTGAAGAACGTGAATATGAGTCAAGGCTCGAGTCTCTCCCCATGGATTTGCTGGTTAAGGTTCTGTGTCACCTGCACCATGACCAGCTAAGGC CAGTCTTTCATGTTTCTCAGAGGATTCGTAAAGCCGTGTTGCTTGCCAGGCAGTTCCATTTTAATTATACAACTCCAGATCGTTCTAGACAAGAGATGTT AAGAACAATGACACCTCTTCCAACCGAACACTGGCCTTTTGTTGGTGACAACGGCAGGAAGGGAGATGCAAAAGGTGCTTTCCTCTCGAGCCCACATACT CCAAAAGCCCCAAGACATGGTCCAAGGCCACCTTCTAGGCTGAAAATCACAGAGATGAAGCAGATAGCTGCAGTACTTTTTCAGGATGCTGCATTCCCAC CAAGATGCGTGGTTCCTTCTGCTATTTCAAAACCAATGTGCAAGTCTTTGGCCTCTAATCGTGTTCTCTTCTACGAGGACGAGCTATGCCAGGCAGTTGC TCAAAACAAGCTTCGGTAG
AA sequence Show only first row Show all	>Lus10025956 pacid=23173305 polypeptide=Lus10025956 locus=Lus10025956.g ID=Lus10025956.BGIv1.0 annot-version=v1.0 MGKVSPDDGNANTPKQRRRLRSSSGRYLKPGALAQLRYGKPSVAKSCTDLAKKRVAVLETDDDTDTLAIESNGTAVDTSPLMMSPVGVLKQNNLVSTPKT PRVEEREYESRLESLPMDLLVKVLCHLHHDQLRPVFHVSQRIRKAVLLARQFHFNYTTPDRSRQEMLRTMTPLPTEHWPFVGDNGRKGDAKGAFLSSPHT PKAPRHGPRPPSRLKITEMKQIAAVLFQDAAFPPRCVVPSAISKPMCKSLASNRVLFYEDELCQAVAQNKLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35930			F-box family protein (.1)		Lus10025956 [exp]	0	1
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	4.2	0.8141
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	4.6	0.8177
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	14.2	0.7952
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10017241 [exp]	17.4	0.7088
AT5G06590			unknown protein		Lus10021091 [exp]	21.0	0.8095
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	22.4	0.7854
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	26.5	0.7751
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	28.8	0.7655
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	31.2	0.7862
AT5G19950			Domain of unknown function (DU...		Lus10019397 [exp]	33.0	0.8064

Compare expression of checked genes

Lus10025956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.