Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06990 153 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 149 / 4e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 149 / 7e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 148 / 1e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43570 147 / 2e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 147 / 3e-42 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G43550 145 / 3e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20130 150 / 4e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20132 147 / 5e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 145 / 1e-41 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014257 [exp] 355 / 9e-120 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 237 / 3e-77 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 228 / 1e-73 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 227 / 4e-73 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 224 / 9e-69 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 195 / 7e-58 AT2G19080 308 / 1e-99 metaxin-related (.1) Lus10003720 [exp] 157 / 4e-46 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034540 [exp] 157 / 6e-46 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 155 / 2e-45 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205100 [exp] 152 / 4e-44 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 152 / 5e-44 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 151 / 2e-43 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 150 / 3e-43 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 147 / 3e-42 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076700 [exp] 143 / 1e-40 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 141 / 6e-40 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 140 / 9e-40 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 136 / 4e-38 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 134 / 3e-37 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10025957 pacid=23173215 polypeptide=Lus10025957 locus=Lus10025957.g ID=Lus10025957.BGIv1.0 annot-version=v1.0 ATGGAAATATGTTCACAACTCAGACAACAGGGATTGTTCTATGTAGGTGATCTAACTGTCAATCAGTTTCTCAAGCCTCCCTCATGTCCAAGCTGTTACA GAATCCAATCTTCTCTCATGGCTAGACATCATGTTGTGCTCTTGAATATCTTATCACTGCTGGTGATTTCAGTGACAGCAAAACTCAGTAACAGTAACAA TAGTAATGTTCCAGCTGTATTTGTGTTTGGAGACTCGGTGGTTGATACCGAGAACAACAATTACATCCCCACCATTGGAAGGAGCAATTTCCCACCTTAC GGCAGAGATTTCCCTTCTCAAATAGCAACGGGACGCTTCAGCAATGGCAGGTGCCTATCTGACTTCTTAGCTGAATTTTTTAAGGTGAAACCACTGCTTC CGCCTTATCTTGATCCAAACTTGGAGCTGCCAGAACTCCTTACTGGAGTCTATTTCGCTTCAACCGCTGCTGGTTTCGACCCTCGAACATCCAAATTCAC TAGAGCAATACCGCTCCTGGGCCAGTTGGATTTGCTTCGAGAATACATCAGCAAGGCGAATGCAAGTGTCAGAGAAACGAGAACTTGGTCCATCGTATCT GAAAGTGCATACATAACATTCATGGGAAGCAACGATCTCACCTTGTTCTACCCTACCATCAGGTCCGGGGTCGACGAGAATTCCTACACTGATATAATAA TCCGACATGTCGTGGACTTCCATCAGGGATTGATGAGGTTATAA
AA sequence Show only first row Show all	>Lus10025957 pacid=23173215 polypeptide=Lus10025957 locus=Lus10025957.g ID=Lus10025957.BGIv1.0 annot-version=v1.0 MEICSQLRQQGLFYVGDLTVNQFLKPPSCPSCYRIQSSLMARHHVVLLNILSLLVISVTAKLSNSNNSNVPAVFVFGDSVVDTENNNYIPTIGRSNFPPY GRDFPSQIATGRFSNGRCLSDFLAEFFKVKPLLPPYLDPNLELPELLTGVYFASTAAGFDPRTSKFTRAIPLLGQLDLLREYISKANASVRETRTWSIVS ESAYITFMGSNDLTLFYPTIRSGVDENSYTDIIIRHVVDFHQGLMRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10025957 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	6.6	0.7762
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	10.4	0.7652
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	14.5	0.7626
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	16.2	0.7502
AT5G06440			unknown protein		Lus10029362 [exp]	16.7	0.6907
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	17.7	0.7547
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	31.6	0.7393
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10010749 [exp]	38.3	0.7005
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	43.1	0.7244
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	45.4	0.6971

Compare expression of checked genes

Lus10025957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.