Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24960 101 / 1e-23 unknown protein AT4G02210 84 / 8e-18 unknown protein AT5G05800 78 / 5e-16 unknown protein AT3G11290 62 / 1e-10 unknown protein AT3G11310 61 / 5e-10 unknown protein AT2G19220 49 / 3e-06 unknown protein AT4G02550 48 / 3e-06 unknown protein AT2G29880 46 / 2e-05 unknown protein AT5G27260 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014257 [exp] 521 / 0 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002039 [exp] 119 / 2e-31 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 109 / 2e-27 AT5G05800 81 / 7e-17 unknown protein Lus10026250 [exp] 92 / 2e-20 AT2G24960 750 / 0.0 unknown protein Lus10013421 [exp] 85 / 2e-18 AT4G02210 418 / 1e-144 unknown protein Lus10010304 [exp] 76 / 4e-15 AT4G02210 395 / 1e-135 unknown protein Lus10024453 [exp] 68 / 7e-14 AT5G05800 50 / 7e-08 unknown protein Lus10007443 [exp] 67 / 1e-13 AT5G05800 50 / 4e-08 unknown protein Lus10016838 [exp] 47 / 4e-06 AT2G24960 71 / 4e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023800 [exp] 120 / 8e-32 AT2G24960 89 / 2e-19 unknown protein Potri.006G265900 [exp] 97 / 3e-22 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 97 / 3e-22 AT2G24960 514 / 2e-168 unknown protein Potri.002G200600 [exp] 94 / 3e-21 AT4G02210 471 / 1e-163 unknown protein Potri.004G172900 [exp] 89 / 2e-20 AT2G24960 96 / 1e-21 unknown protein Potri.004G135901 [exp] 74 / 3e-16 AT5G05800 44 / 1e-05 unknown protein Potri.010G076000 [exp] 66 / 4e-12 AT5G05800 72 / 1e-13 unknown protein Potri.001G339400 [exp] 64 / 2e-11 AT5G05800 107 / 6e-26 unknown protein Potri.007G118701 [exp] 64 / 2e-11 AT5G05800 109 / 6e-27 unknown protein Potri.014G061450 [exp] 62 / 8e-11 AT5G05800 111 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025958 pacid=23173094 polypeptide=Lus10025958 locus=Lus10025958.g ID=Lus10025958.BGIv1.0 annot-version=v1.0 ATGAAACTGGAGAAAATATCTCCAGAGATAATGACAACAGCTACCCGTGTGACTCGATACGGGAGAGAATCACGAGCAGTTCAGGAGGATGACCAGCAGC AACCCTCTCGGGCCAGGTGGACAAATGACCTTACCAAGATAGTGGCCGAGTTGATGGTGGACGAAGTTCAACGAGGGAACAGAACCAGAACTTCTTTCAA AAAGCAAGCTTGGGAGTTCATAACCCAACAATTCCACCAGAAAACAGGTCTGAAATGGGACGAACAGCAACTCAAGAGTAAACACATCCTCATGAAGAAG CAGTACGCCATTGTTAAGCCACTCCTGGATCATAGTGACTTCTCTTTTGACGAATCCACCGGCACTGTTGTAGCTGCCAACGATGATGCTTGGGCTGACT ACCTTAAGGAGCACCCGGATGCTGAGCAGATTAAAAGCAATGGTTGCCCGTTCTACAATCAACTTTGCTTGATATTCTCCATCCCGGTGATATCGTCTAA TGGAAGACACAGCCAGGAGTCTTCCTTTGAGCATCAGCCTCCAGATGCTTTAAAGGAGGACGAGGAGTTGTCATCGGCATCAGAGGAAACGGAAGAGACG GGTGATCAACCCTATACCAACAGAACCCCGATTCGACCTGCTGCAGCTCGTAGTAAGAAAAGAGGAAGGAAGGGTATGGATGATGCAATTGCAGCGGGGA TGCAGCATATGGCAGCTGCTTCGACATTGTACACAACGGTAGTCAATGATGTGGAAAACAAGTATAGTATGGCAGATTGCATTAAAGCTCTGGATGGGAT GGAAGGTGTTCTCGACCAAAACGTCTATTGTGCTGCACTCTATCTGTTCAATTGCCGGAACAAGAGGGAAATATTCATGTCCCTTACTGCTGATCGGCGC TTGATTTGGTTGCAGGGGAAATGCTCAAGTTAG
AA sequence Show only first row Show all	>Lus10025958 pacid=23173094 polypeptide=Lus10025958 locus=Lus10025958.g ID=Lus10025958.BGIv1.0 annot-version=v1.0 MKLEKISPEIMTTATRVTRYGRESRAVQEDDQQQPSRARWTNDLTKIVAELMVDEVQRGNRTRTSFKKQAWEFITQQFHQKTGLKWDEQQLKSKHILMKK QYAIVKPLLDHSDFSFDESTGTVVAANDDAWADYLKEHPDAEQIKSNGCPFYNQLCLIFSIPVISSNGRHSQESSFEHQPPDALKEDEELSSASEETEET GDQPYTNRTPIRPAAARSKKRGRKGMDDAIAAGMQHMAAASTLYTTVVNDVENKYSMADCIKALDGMEGVLDQNVYCAALYLFNCRNKREIFMSLTADRR LIWLQGKCSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24960			unknown protein		Lus10025958 [exp]	0	1
AT2G48060			unknown protein		Lus10027981 [exp]	5.5	0.6660
					Lus10005511 [exp]	9.0	0.6665
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	24.7	0.6635
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015014 [exp]	196.2	0.6230
					Lus10019733 [exp]	267.3	0.5962
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	270.3	0.6042

Compare expression of checked genes

Lus10025958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.