Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66150 1083 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G13980 989 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 984 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G11170 796 / 0 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 796 / 0 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT2G45810 268 / 7e-78 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 264 / 8e-77 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 259 / 4e-75 ATRH8 RNAhelicase-like 8 (.1.2) AT1G72730 246 / 2e-71 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 242 / 2e-70 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014259 [exp] 1679 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10012578 [exp] 952 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10035111 [exp] 907 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014260 [exp] 863 / 0 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10036074 [exp] 820 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10002021 [exp] 816 / 0 AT5G11200 768 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10041516 [exp] 808 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 516 / 9e-162 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10002905 [exp] 454 / 7e-146 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056300 [exp] 1278 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.014G143600 [exp] 991 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 969 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.012G106500 [exp] 929 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.006G253100 [exp] 825 / 0 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 823 / 0 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.002G157500 [exp] 262 / 4e-76 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 258 / 8e-75 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.001G197900 [exp] 242 / 4e-70 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 241 / 5e-70 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10025960 pacid=23173263 polypeptide=Lus10025960 locus=Lus10025960.g ID=Lus10025960.BGIv1.0 annot-version=v1.0 ATGGGAGAAACAAGGGACAACGATTACGAGGAGGAGCTTCTCGATTACGAGGAAGAGGAGGAGAAAGCCCCCGACTCCATCACTGCCAAAGTCAACGGCG AAGCCCCTAAGAAGGGATATGTTGGGATACACAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAGCTACTTCGGGCTATTGTAGATTCTGGGTTTGA GCATCCTTCCGAAGTTCAACACGAGTGTATTCCCCAAGCCATCTTGGGAATGGATGTTATCTTCCAAGCTAAGTCTGGGATGGGAAAGACTGCTGTCTTT GTTCTGTCTACTCTCCAGCAAATTGAGCCAACTCCAGGGCAAGTTATTGCCCTTGTTCTATGTCACACAAGAGAACTTGCCTACCAGATCTGCCACGAGT TTGAGAGATTCAGTACCTACTTGCCGGATACCAAGGTTGCTGTATTTTATGGTGGTGTCAACATAAAAACTCACAGGGATCTTCTGAAAAATGAATGCCC TCACGTTGTTGTTGGAACACCTGGTAGAATACTGGCATTGGCGCGAGACAAGGAACTTTCTCTGAAAAATGTTAGACATTTCATTCTTGATGAATGTGAC AAGATGCTTGAATCCCTTGACATGCGGAGAGATGTGCAGGAGATATTCAAGATGACCCCTCATGACAAGCAAGTCATGATGTTTTCTGCAACACTAAGTA AAGAAATCCGCCCAGTATGCAAGAAGTTCATGCAAGATCCGATGGAAATTTATGTTGACGATGAGGCCAAGCTGACTCTTCATGGACTTGTCCAGCACTA CATCAAATTGACCGAGCTGGAGAAAAACCGGAAGCTGAACGACCTTCTTGATGCTCTGGACTTCAATCAAGTTGTTATCTTTGTCAAGAGTGTGAGCCGT GCAGCTGAGCTGAACAAGTTGCTGATTGAGTGTAATTTCCCTTCAATATGCATCCACTCTGGAATGTCCCAGGAGGAAAGGCTGACACGCTACAAGGGTT TCAAAGAGGGTCATAAAAGGATTCTTGTTGCTACTGATCTTGTTGGGAGGGGAATAGACATAGAGCGGGTCAACATTGTTATTAACTATGACATGCCTGA TTCAGCTGACACATATCTTCACAGGGTTGGCCGTGCTGGTAGGTTTGGTACGAAGGGTCTTGCTATTACATTTGTATCATCTGCTTCCGACTCAGATGTT CTTAATCAGGTTCAGGAGAGGTTTGAGGTGGACATAAAAGAACTGCCGGAGCAAATTGATACATCTACATACAGTAAGTTTTCTACAACTTCCATGAAGT GTAAGAAACATGAGAAAGCTGACGTGGCCGTTTGTCTCGTTCATCGTCATATCTACTCTTTACGTAACTCTTGTCGACGGCGGTCCTTTGTCGACGGCAG TCCTCTAAACTACCACTACGACACAGGAAGTGGGGTTGTGGATGGCAAACTGAACGTTCATTTGGTTCCTCATTCACACGACGACGTCGGCTGGTTGAAG AACATTGATCAATACTACGTCGGCTCCAATAACAGTATTCAGAATGCGTGCGTTCAGAATGTGCTGGATTCTGTTGTGGCTGCCCTTCTGAAGGATCCCA ACAGGAAGTTTGTCTTTGCTGAAATGTGTATATTGGTGGTCAAAATGGGTTCTCATGAAATTTTCTTTTTGACCTTTGGATGCAAAGCTCAGTCCTTTTT CAATCGTTGGTGGGAAGAACAGAGCAAGGAAACACAGGAGATAGTGAGGAAGCTAGATCATGGCGGACAACTCGAATTCGTAAATGGTGGTTGGTGCATG CACGACGAAGCAGCAACGCATTACATAGACATGATTGATCAGACAACGTTAGGGCATCGGATGATCAAGAACGAGTTCAACACGACACCTCGTGCCGCCT GGCAAATCGATTCATTTGGTCACTCTGCTGTCCAGGCTTACCTCCTTGGCGCTGAGAGTGGATTCGATTCGGTACATTTCGCTACGGTTGATTACCAAGA CAGAGCGAAAAGGAAGGCCGACAAGTCTCTGGAAGTTGTGTGGCGTGGCTCCAGAACTTTTGGTTCCTCCTCTCAGGGTTTCCATTTTGAAGTTGGTGAT GAGGATGATCAGGGTGTAATTGTCCAGGATGATCCTCGTATTTTCGATTACAATGTGGATCAACGTGTTAAGGAGTTCGTTCTTGCCGCCAAAACACGGG CTAATGTGACGAGGGCGAACCATGTAATGTGGACGATGGGCGATGATTTCCAGTACCAGTTTGCTGAGTCTTGGTTCAGGCAAATGGACAAGCTCATTCA TCATGTCAACAAGGGTGGAGAAATCAATGTCTTGTACTCCACGCCATCTATCTACACTGATGCCAAAAATGCAGCAAACCAGTCCTGGCCACTCAAAACT GATGATTTCTTCCCATATGCTGATGGAGAAGATGCCTATAGCAGATTTGTATTTCAGAATCTTAGGTTTGGTTTGGCGAGTGAGGAAGCGGAAATGACTG TGAGTGCTGCACTTACATGCTTAGTAAGTAAGAAGACAAGAGGTCAATGTGGATCCCTGGCTAAGACTTCCAGCCAGCTGACTAGGAAGATGCAGTTTAG CCAGACCAAATCACTTTTAGTGCAGTGCCAATTGTTGAACATCAGTTATTGCGAACCAACGACAGAAGCCGGGAGTGGAAAGCCACTGGTTGTTGTTGTG TACAACCCGCTTGGATGGAATCGGACAGATATTGTGAGAATACCCGTCAATGATTCTTCCCTTGTCGTGTCTGATTCTTCGGGCAAAGCAATCGAATCAC AATACATAAGCATGGATAATCTCACAAACAACTTGAGAAAATTCTACTTGAAGGCCTACACAGGGAAATCATCCGACCAAGTTCCAAAGAGCTGGCTTGT CTTCCAATTATCATTACCTCCACTTGGTTGGAGCACTTACTTCCTGTCCACGGCACCTGATATTGCGAAAACGAGAAACAGTTACTCAGTCAAGGGCACT GCAGTCGATGATGTCGTTGAAATCGGACCTGGGAATCTAAAGATGTCATTTTCATCAACTTCCGGACAACTCACTCGGATGTATAACAATGTAACCGGGG TTGATGTACCGATACAACAAAGCTATGTCTGGTATGCATCAAGTACTGAAGCAGCGCAAAGTTCCGGTGCCTACATTTTCCGGCCTGATTCAAACACTCC AAATATTGTTGCAAGAAAAGTCGCCATGGAGGTCATCCGTGGACCGATTGTTGATGAAATTCATCAGCAATTCGGCCAGTGGATTTACCAGGTTACAAGG CTTTACAAAGACAAACAGCATGCTGAAATTGAATACACTATTGGTCCAATTCCAACTGATGACGGTGCTGGAAAAGAGGTGGTCTCTCAGTTGACAGCCA ACATGGTAACGGATAAAGTGTTCTATACTGATTCTAACGGAAGAGACTTCCTAAAGAGGGTACGCAATGTAAGAAATGACTGGAACCTGTCTGTGAACCA ACCTGTTGCAGGAAACTATTATCCGGTAATGCATAGAAAATCAGATGAGATTAGGCTTAACCTTGGAGCCTATATCACTGACTCCAAAGCTGAACTGTCT GTGCTGGTTGATCGTGCCACTGGTGGAGGCAGCATCAAAGATGGTCAGCTAGAACTTATGCTCCACAGGAGAATTCTACAAGATGACGGCAGAGGTGTGG GTGAGCCTCTTGACGAACAAGTCTGTGTTGATAACTCTCTCACATGTCAAGGCTTAACTGTTCGAGGAAATTACTATGTGAGCATCGACAAGTTAGGAGG CGGAGCCATGTGGCGACGCACGACTGGTCAAGAGATCTATTCACCACTTCTTCTAGCATTCACTCATGAGGAAGACAAGTTATGGAAAGCCACTCACTTG ACCACATCAACATTATTGGACACTGGATATAGCTTGCCCCTCAATGTTGCTTTGATCACTCTAGAGGAACTCGAAGATGGAAGTGTGCTACTCCGATTAG CTCATCTGTATGAGGCAGGGGAGGACGCTAAATATTCGTCTCTAGCAAAAGTCGAACTCAAGAAGATGTTTCCTGGGAAACAGATAAAGGGAGTGAAGGA AATGAGTTTATCAGGAAACCAGGAGAAGTCTAATATGAAGAGAATGAGTTGGACAGTTGAAGGGGATAAAGGAAATGAAGGGAAACCTCTTAGAGGAGGA CCCTTTGATCCTTCCGCTCAAATTGTTGAGCTTGCTCCCATGGAGATCCGTACATTCTTGCTGACTTTCTCTTGA
AA sequence Show only first row Show all	>Lus10025960 pacid=23173263 polypeptide=Lus10025960 locus=Lus10025960.g ID=Lus10025960.BGIv1.0 annot-version=v1.0 MGETRDNDYEEELLDYEEEEEKAPDSITAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVIFQAKSGMGKTAVF VLSTLQQIEPTPGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHRDLLKNECPHVVVGTPGRILALARDKELSLKNVRHFILDECD KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSR AAELNKLLIECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDV LNQVQERFEVDIKELPEQIDTSTYSKFSTTSMKCKKHEKADVAVCLVHRHIYSLRNSCRRRSFVDGSPLNYHYDTGSGVVDGKLNVHLVPHSHDDVGWLK NIDQYYVGSNNSIQNACVQNVLDSVVAALLKDPNRKFVFAEMCILVVKMGSHEIFFLTFGCKAQSFFNRWWEEQSKETQEIVRKLDHGGQLEFVNGGWCM HDEAATHYIDMIDQTTLGHRMIKNEFNTTPRAAWQIDSFGHSAVQAYLLGAESGFDSVHFATVDYQDRAKRKADKSLEVVWRGSRTFGSSSQGFHFEVGD EDDQGVIVQDDPRIFDYNVDQRVKEFVLAAKTRANVTRANHVMWTMGDDFQYQFAESWFRQMDKLIHHVNKGGEINVLYSTPSIYTDAKNAANQSWPLKT DDFFPYADGEDAYSRFVFQNLRFGLASEEAEMTVSAALTCLVSKKTRGQCGSLAKTSSQLTRKMQFSQTKSLLVQCQLLNISYCEPTTEAGSGKPLVVVV YNPLGWNRTDIVRIPVNDSSLVVSDSSGKAIESQYISMDNLTNNLRKFYLKAYTGKSSDQVPKSWLVFQLSLPPLGWSTYFLSTAPDIAKTRNSYSVKGT AVDDVVEIGPGNLKMSFSSTSGQLTRMYNNVTGVDVPIQQSYVWYASSTEAAQSSGAYIFRPDSNTPNIVARKVAMEVIRGPIVDEIHQQFGQWIYQVTR LYKDKQHAEIEYTIGPIPTDDGAGKEVVSQLTANMVTDKVFYTDSNGRDFLKRVRNVRNDWNLSVNQPVAGNYYPVMHRKSDEIRLNLGAYITDSKAELS VLVDRATGGGSIKDGQLELMLHRRILQDDGRGVGEPLDEQVCVDNSLTCQGLTVRGNYYVSIDKLGGGAMWRRTTGQEIYSPLLLAFTHEEDKLWKATHL TTSTLLDTGYSLPLNVALITLEELEDGSVLLRLAHLYEAGEDAKYSSLAKVELKKMFPGKQIKGVKEMSLSGNQEKSNMKRMSWTVEGDKGNEGKPLRGG PFDPSAQIVELAPMEIRTFLLTFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66150			Glycosyl hydrolase family 38 p...		Lus10025960 [exp]	0	1
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	3.9	0.9551
AT3G52110			unknown protein		Lus10039611 [exp]	6.0	0.9491
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	12.6	0.9449
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	15.7	0.9441
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	16.5	0.9380
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	17.0	0.9406
					Lus10001684 [exp]	17.3	0.9384
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	17.7	0.9428
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	20.2	0.8623
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	20.6	0.9372

Compare expression of checked genes

Lus10025960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.