Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66230 183 / 7e-55 Chalcone-flavanone isomerase family protein (.1.2) AT3G51230 110 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014261 [exp] 467 / 9e-166 AT5G66230 233 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114100 [exp] 255 / 3e-82 AT5G66230 237 / 1e-75 Chalcone-flavanone isomerase family protein (.1.2) Potri.007G057800 [exp] 113 / 9e-29 AT5G66230 155 / 7e-45 Chalcone-flavanone isomerase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025961 pacid=23173185 polypeptide=Lus10025961 locus=Lus10025961.g ID=Lus10025961.BGIv1.0 annot-version=v1.0 ATGGAGACACCTTCCTCAACCAAACGAGTCACAAGATCTCAGTCTCGAGCTGCTTCGCTCCACAACATCAATAACATCTCAACATCTCGGAAGATTGAAG ACTTGGGGAAAAACAGCGGCGGCAAGCAGCAGCAAGATCGGTCAGCGCTTGTTGACATAACAAATGATTCTCCCATCGTTGGGCTTGCAATGGGGATATT GGAGACTCCATCGTCCTCAGCCACCACCAAGAAAACAATCAGCAAAATCAAGAACATTAACAGCAACATAAAGACTCCTGGATCTGGAGAAGCTCTACTG AGGGGTCAAGTGAAGACTCTGCTGCAGCGTGTAGAGGAAGAAGCCGAGTCGTCAAAGATTCCCCTGGAGAATCGTCCTTTCGTCAAACTTCAGGGGCTCT TCCTCAACTCTTCTCCCATTGGCCTCCTTGCACCGACTCCTGCTAATACTCCAATGATTCTTGATGATCTGTCTGATGACAACAACAAATCATCCACTAG CATGATGATGATCTCTCCTTTGCCTGTTATTCAAGAGCAGCTTAAGATTTGCGAGGCGGCGGTGAGTGAAATGTATAATGGGAGGAAGCTTGAGACCCTG GAATCTCAGAAGAGTGTGAACAGGCAATTGCTGCTGGATTTCTCCTCGGAAAAGTCTGAATCTTGTGACTCTGCAACTGAGTCTTGTAGCAAAGAAGAGA AGTCAATATCATCCGAAGTAACTGATGATGAATGCGCTTCCATATGGTCCATTCAGGTGAATGCAAGCACCCGTGATGATGATGATTATGCAGTGATTGA AGAAGAAGCAGGAGAAGAGGTTTATGATGATGGCAATTACTACAGCTACAATGACCAGGAAGAAGGAGAAGAGTACGAGGAGGAGGGATCCATTGATGAG CTGTGTGAAGGGATTAGCAAAATAAGTGTGGGAAAGCACAAGAGGTTTGAGTACGATAGCGATGATGAGCTTGTTCTTGTTGGGGACGGTGTTGTGAAAT TGAAGGGACTGCCAACTCCTAAAGGGAAGCATTTGAGGTTCCCTGGAGAAGAAGAACAGGAAGAAAACTGCTGA
AA sequence Show only first row Show all	>Lus10025961 pacid=23173185 polypeptide=Lus10025961 locus=Lus10025961.g ID=Lus10025961.BGIv1.0 annot-version=v1.0 METPSSTKRVTRSQSRAASLHNINNISTSRKIEDLGKNSGGKQQQDRSALVDITNDSPIVGLAMGILETPSSSATTKKTISKIKNINSNIKTPGSGEALL RGQVKTLLQRVEEEAESSKIPLENRPFVKLQGLFLNSSPIGLLAPTPANTPMILDDLSDDNNKSSTSMMMISPLPVIQEQLKICEAAVSEMYNGRKLETL ESQKSVNRQLLLDFSSEKSESCDSATESCSKEEKSISSEVTDDECASIWSIQVNASTRDDDDYAVIEEEAGEEVYDDGNYYSYNDQEEGEEYEEEGSIDE LCEGISKISVGKHKRFEYDSDDELVLVGDGVVKLKGLPTPKGKHLRFPGEEEQEENC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	0	1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	1.4	0.9760
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	2.8	0.9713
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	4.9	0.9630
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	4.9	0.9660
					Lus10037590 [exp]	5.2	0.9713
AT5G42330			unknown protein		Lus10030749 [exp]	7.4	0.9580
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	9.5	0.9589
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	9.5	0.9655
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	9.9	0.9629
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	10.5	0.9659

Compare expression of checked genes

Lus10025961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.