Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75680 548 / 0 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G19940 543 / 0 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT4G11050 353 / 1e-114 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G02800 347 / 8e-114 ATCEL2 cellulase 2 (.1) AT2G44560 342 / 5e-112 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44550 341 / 1e-111 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT4G02290 341 / 2e-111 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT2G44540 339 / 8e-111 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G32990 335 / 5e-109 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 337 / 3e-108 ATGH9C1 glycosyl hydrolase 9C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014265 [exp] 1025 / 0 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10033156 [exp] 578 / 0 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10034515 [exp] 575 / 0 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10010201 [exp] 354 / 5e-115 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10009724 [exp] 351 / 8e-115 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10008208 [exp] 348 / 5e-114 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10017525 [exp] 347 / 9e-114 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10032377 [exp] 348 / 2e-112 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 345 / 2e-111 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115400 [exp] 615 / 0 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 582 / 0 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 576 / 0 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.007G071200 [exp] 355 / 2e-115 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.014G157600 [exp] 351 / 4e-115 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.014G126900 [exp] 343 / 3e-112 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 342 / 2e-111 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G092200 [exp] 344 / 3e-111 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G083200 [exp] 339 / 1e-110 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.001G356000 [exp] 337 / 8e-110 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10025965 pacid=23173131 polypeptide=Lus10025965 locus=Lus10025965.g ID=Lus10025965.BGIv1.0 annot-version=v1.0 ATGGAATTTGTGATCAAGAAGCTGAAGCCTCCAAAGACACCACAGAAGGAAGTTGAAGCAGTGACCAAGAACGTCGAGGTGAAGAAGAACGAGTTCTGGG GATGGTGTTTCTTGGCAACCTGTCTCGCCGTGCTGGTTGTATCATTAGGCATCTACACTCTCATCACCCTCCGTCACCACTTCCGCCGCCACAACAAACA CCCCGGCCTCCCATCGGACCCCATTCTCGAGAACTACGCAGATGCTCTCGGTGTCGCCTTCCAATTTTTCGACGTCCAGAAGTCCGGCAAGATAACAACG TCGGGGAACAGAATCCCTTGGAGAGGCGACTCTGCTATGCGGGACGGAAGCGAGAGGAACTTGGACTTATCGAAAGGGCTATACGACGCCGGCGACAATG TCAAATTCGGGTTTCCGATGGCTTTCACGGCCACACTCTTGTCCTGGTCCATTCTTGAGTACGGTCAAAGGATGGCATCCGTTGACCAACTTGTTCATGC TCAACAGTCTCTCAGATGGATCACTGACTTCCTCATCAACGCCCACCCTTCCCCCAACGAGTTCTATGTTCAGGTAACTCCCCCCTTTGATCATCTTGTC AGAGCTCTGCAACAATTTGAGGTGGGGGATCCAGGAATCGACCACGAATGCTGGGAAAAGCCAGAGAGGATGGCAAACGAGAAACGCCCACTGACTCAAC AAGACCCTCACTACTCCGATCTGCTACGAGCAAATGCAGAGGAGCTTTTCGCATTTGCAGACCTTTACAGAGGCTTATACAGCGTCAGCATCCCACAAGT GGGCAAGTACTACAACTCCTCCGGGTACGGAGACGAACTCCTCTGGGCCGCCTCGTGGCTTTACTACGCAACCAGAGACCCTGCTTACTTGAAATACGTC ACTGTCGTCAATGGAGATGCCTTTGGGAATTGGGGCGATCCTTCTTGGTTCAGTTGGGATGATAAGCATGCTGGAACTCAGGTTTTGATTTCTAGGTTGA ACCTTTTGGGAGATGGGGAAAATGGTGGAATGACTGCTGATGAGAATGTTAAGGTTCAGATGTATACCAGAATGGCGCAGGCTGCTATGTGCCAGCTGTT TCCTGATTCGCCTTCCGCCACAGCTAGCAGAACATCTGGCGGGTTGATATGGGTGCAAGAATGGAACCCTCTGCAATACTCTATGGCTTCTGCATTCTTA GCTGTTCTTTTCAGTGATTACATGGCCACATCTCAAGTCCAAACTCTCTACTGTGACGGAACGACTTACAGCTCCAAGGATCTTAGAGACTTCGCCATGT CACAAGCAGATTATATACTGGGAAAGAATCCAATGGACATGAGTTATCTAGTTGGCTACGGACTTGACTACCCTCGCTACGTCCACCACAGAGGATCATC AATCCCAGTTGATTCCAGAACTGGGTGTAGGGACGGATTCAAGTGGCTGGATTCCATTACCCCAAATCCAAACGTAGCTCTTGGAGCTGTAGTCGGTGGA CCATCCAAGAACGAAACGTTCAACGATGACAGAAGAAACACTATGCAAACTGAACCTACAACTTACAATTCTGCATTCATCGTCGGCCTTCTCTCTGGCT TGCTAAGCACTGGCCCCGTTGCTCAAACTTTTACATACTTAGAACCCTAG
AA sequence Show only first row Show all	>Lus10025965 pacid=23173131 polypeptide=Lus10025965 locus=Lus10025965.g ID=Lus10025965.BGIv1.0 annot-version=v1.0 MEFVIKKLKPPKTPQKEVEAVTKNVEVKKNEFWGWCFLATCLAVLVVSLGIYTLITLRHHFRRHNKHPGLPSDPILENYADALGVAFQFFDVQKSGKITT SGNRIPWRGDSAMRDGSERNLDLSKGLYDAGDNVKFGFPMAFTATLLSWSILEYGQRMASVDQLVHAQQSLRWITDFLINAHPSPNEFYVQVTPPFDHLV RALQQFEVGDPGIDHECWEKPERMANEKRPLTQQDPHYSDLLRANAEELFAFADLYRGLYSVSIPQVGKYYNSSGYGDELLWAASWLYYATRDPAYLKYV TVVNGDAFGNWGDPSWFSWDDKHAGTQVLISRLNLLGDGENGGMTADENVKVQMYTRMAQAAMCQLFPDSPSATASRTSGGLIWVQEWNPLQYSMASAFL AVLFSDYMATSQVQTLYCDGTTYSSKDLRDFAMSQADYILGKNPMDMSYLVGYGLDYPRYVHHRGSSIPVDSRTGCRDGFKWLDSITPNPNVALGAVVGG PSKNETFNDDRRNTMQTEPTTYNSAFIVGLLSGLLSTGPVAQTFTYLEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10025965 [exp]	0	1
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	10.4	0.6829
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10024102 [exp]	12.7	0.6051
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	23.2	0.6515
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	27.3	0.6209
					Lus10029082 [exp]	89.2	0.5768
AT2G46300			Late embryogenesis abundant (L...		Lus10010130 [exp]	111.3	0.5804
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	225.7	0.5224

Compare expression of checked genes

Lus10025965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.