Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18040 199 / 2e-66 PIN1AT "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) AT1G26550 62 / 2e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G19370 41 / 0.0002 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014266 [exp] 244 / 3e-84 AT2G18040 199 / 9e-68 "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) Lus10019084 [exp] 60 / 1e-11 AT1G26550 225 / 4e-77 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10015714 [exp] 60 / 2e-11 AT1G26550 224 / 1e-76 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013400 [exp] 211 / 7e-71 AT2G18040 198 / 4e-67 "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) Potri.008G089900 [exp] 62 / 2e-12 AT1G26550 214 / 1e-72 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00639 [flax] [poplar] Rotamase PPIC-type PPIASE domain
Representative CDS sequence Show only first row Show all	>Lus10025967 pacid=23173142 polypeptide=Lus10025967 locus=Lus10025967.g ID=Lus10025967.BGIv1.0 annot-version=v1.0 ATGCGAATTGTAGTGCAGTCGTCATCGATAAAGAGGTGTTATCGAGAGAGCAGGGACGAGGCGGAGAGGTGGAAGAAGATCGATTTTACAGCTTTAACGG CGAAAATAGATTCCGATCGGAAGCGCAAGAAGGATTCGATCTCTACGGAGGATCGAAGAGCGAAGGAGAAGGAGAAGGAAAGAGAGCGGGAGAAGAGCAA GAAGAGATCGAAGCCAATGGCGTCGGGGAATCAGGTGAGGGCTTCCCACATACTGATAAAGCACGAGGGATCCCGAAGGAAAGCTTCGTGGAAGGATCCG GAAGGCCGTGTGATCATGAACACTACAAAAGAGAGCGCCATCGCTACCCTCAAACAGTTCCGCGAGGATATCCTATCTGGGAAGGCTAAGTTCGATGACG TTGCAGCTCGCCACTCTGATTGTAGCTCTGCCAAGCGCGGCGGGGATCTCGGTCCATTTGGACGTGGGCAGATGCAAAAGCCTTTTGAAGATGCAACATT CGCCCTGAAGGTGGGCGACATAAGTGACATAGTGGACACCGACAGTGGCGTTCACATCATACTCAGAACTGCTTAA
AA sequence Show only first row Show all	>Lus10025967 pacid=23173142 polypeptide=Lus10025967 locus=Lus10025967.g ID=Lus10025967.BGIv1.0 annot-version=v1.0 MRIVVQSSSIKRCYRESRDEAERWKKIDFTALTAKIDSDRKRKKDSISTEDRRAKEKEKEREREKSKKRSKPMASGNQVRASHILIKHEGSRRKASWKDP EGRVIMNTTKESAIATLKQFREDILSGKAKFDDVAARHSDCSSAKRGGDLGPFGRGQMQKPFEDATFALKVGDISDIVDTDSGVHIILRTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	0	1
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	1.0	0.8706
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	3.5	0.8498
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	4.2	0.8187
AT1G65270			unknown protein		Lus10026847 [exp]	5.3	0.8576
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	6.0	0.8420
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10013153 [exp]	6.0	0.7873
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	7.4	0.8228
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	8.5	0.7616
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	10.4	0.8060
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	14.5	0.7900

Compare expression of checked genes

Lus10025967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.