Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18050 117 / 4e-33 HIS1-3 histone H1-3 (.1.2) AT2G30620 71 / 5e-15 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 54 / 1e-08 winged-helix DNA-binding transcription factor family protein (.1) AT1G14900 43 / 6e-05 HMGA high mobility group A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014267 [exp] 117 / 2e-33 AT2G18050 102 / 1e-28 histone H1-3 (.1.2) Lus10042541 [exp] 69 / 2e-13 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10022001 [exp] 67 / 5e-13 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 65 / 5e-13 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005535 [exp] 59 / 3e-10 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 58 / 6e-10 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006561 [exp] 57 / 2e-09 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116600 [exp] 118 / 7e-33 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.007G014200 [exp] 98 / 2e-25 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.008G162300 [exp] 67 / 1e-13 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.010G076800 [exp] 64 / 2e-12 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.002G199900 [exp] 63 / 5e-12 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G219800 [exp] 63 / 1e-11 AT1G06760 89 / 1e-20 winged-helix DNA-binding transcription factor family protein (.1) Potri.013G042700 [exp] 61 / 2e-11 AT2G30620 66 / 2e-13 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.002G043100 [exp] 57 / 1e-09 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.004G087500 [exp] 45 / 8e-06 AT1G14900 91 / 1e-22 high mobility group A (.1) Potri.015G040200 [exp] 46 / 1e-05 AT1G48620 99 / 6e-22 high mobility group A5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10025968 pacid=23173178 polypeptide=Lus10025968 locus=Lus10025968.g ID=Lus10025968.BGIv1.0 annot-version=v1.0 ATGGCTGATAACAAGGAAAATCAAGTTCCAGTTACTGATGCTCAAGTAGAGCAGCCACCGGCGCCGGAGGAGGAGCAGAAGAAGCCGGAAGGAGAAGATG CGCCGCCAGCTGCGGTGGGGAAAGAGCAGAACAGCAAGGCGGTTGCTGCTCCTAAGGAGAAGAAGCCCCGGCCGTCCAAAACCGCCGCTCATCCACCTTA TTTCCAGATGATCAAAGAAGCGTTGATGGCGTTGGACGAGAAGAGCGGATCGAGCCCGTACGCAATAGCGAAGAAAATGGAGGAAAAGCACAAAGCGGTG CTTCCAGCTAATTTCAGGAAGACACTGGCGGTACAGCTGAAGAACTGTGAATCCAAGGGGAAGCTGATCAAAATCAAAGCTTCTTACAAGCTCTCGTCAT CCGAGTCGGGAAAGAAGAAGCAGGAGAAGAAGAAATCATCATCTCATCCTACTCCGAGAACCTCACTTAAAGCTAGAGCTGCTGCAGCTGGTGTTGATCA TACTAAAATTGCACAGAAGAAGAAGAAGAAGAAGAAGGCTAAGACCAAGTCTGTAAACGATCCGGAGACTGGTAGGAAGAAACTGGTTCCGAAGAAATCG GTTGGTGGTAGCAAGGCGAAACAGCCGAGGTCGATCAGGTCCCCTGCTGCTAGAGCCAAGAGAGCTAACGCCGCTGCGTAA
AA sequence Show only first row Show all	>Lus10025968 pacid=23173178 polypeptide=Lus10025968 locus=Lus10025968.g ID=Lus10025968.BGIv1.0 annot-version=v1.0 MADNKENQVPVTDAQVEQPPAPEEEQKKPEGEDAPPAAVGKEQNSKAVAAPKEKKPRPSKTAAHPPYFQMIKEALMALDEKSGSSPYAIAKKMEEKHKAV LPANFRKTLAVQLKNCESKGKLIKIKASYKLSSSESGKKKQEKKKSSSHPTPRTSLKARAAAAGVDHTKIAQKKKKKKKAKTKSVNDPETGRKKLVPKKS VGGSKAKQPRSIRSPAARAKRANAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	0	1
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	2.0	0.8354
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	2.4	0.8577
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10028264 [exp]	2.4	0.8569
AT4G34630			unknown protein		Lus10028793 [exp]	4.6	0.8200
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	4.7	0.8620
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	10.6	0.8186
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	12.3	0.7640
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	12.4	0.8262
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	14.0	0.8069
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	15.3	0.7739

Compare expression of checked genes

Lus10025968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.