Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27760 87 / 3e-18 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024945 [exp] 109 / 2e-25 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10022880 [exp] 96 / 3e-23 ND / Lus10018689 [exp] 85 / 1e-17 AT1G27760 565 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Lus10007734 [exp] 86 / 2e-17 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10024944 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016800 [exp] 95 / 5e-21 AT1G27760 563 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.009G088700 [exp] 94 / 1e-20 AT1G27760 198 / 9e-59 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.002G119100 [exp] 91 / 1e-19 AT1G27760 539 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05004 [flax] [poplar] IFRD Interferon-related developmental regulator (IFRD)
Representative CDS sequence Show only first row Show all	>Lus10025970 pacid=23173097 polypeptide=Lus10025970 locus=Lus10025970.g ID=Lus10025970.BGIv1.0 annot-version=v1.0 ATGAAGCCGCCGTCGCGGCGGGTCACGCTTGCGGGTTACCTCGACCAGCTATCCGATTCGGAGAAGCACAAGACGCGGAAAAGAGAGGAAGCGCTCCAAG GAATCGTTCAGGAGCTTACCAGAAACCTGAATCGGGACGAGCCCTTTCTCAACTCGAATCGTATGAGCTTGGTAGACCAGTGCCTCCGCGTGATAGCGAA GGGGCGGTCGGTGGAGGAGCTAGCAATGGCGACCCGTGCAATTGGACTGGTGGTAATGATCCTGGACGATGCGGAGGCTGCTCATGAGATATATCGCGAT TCAGCGTCAAAATTGTTCGACGCTGTGAAATTGAGCAGCTCGAAGTTGAAGCTTCCCGCTCAGGTGTTGCAATGCTTTGCTGTGGTTACCTTCTTTGGAG CCTTTCTATCTGAGGATAGGTTGGAATCAATGGAGATGTTATGGAGCCACTATTTCCAGGATTCTGGTCACCAAGGAAAGGAGGGGAATTCACCTGAACT AATAGCAGCTGCAATATCATCTTGGACATTCGTTTTGTCCAACCTTAACAATGGAGTCAATCGAAGACATTGGCAAACAAAAATCCCTTGCCTTTTCTAT CTCATGGAGCATGGCGATGAATCTGTTGTTATTGCCGCTGCTGAGGCATTAGCTCTAATCTTTGAGATTGATCCTCGCAGCAATGGTCCCAGGAGGCTTG CTGAGAATTGCAATGATGGAGATGGAGCAGAGTCTTCTTCTTCTTCTTCTTCTCCTTCCAATGAATTTAAGAGCAGCATTGCCAAGAAGTTGAATGAGAT AATGGCTTTGAAGAAAACAATGTACGATGACGAGGAGGGGAAGGAGCAAGATCAAACAACGGTTACAACTAGGCTAGCATTGCTGGCTGACTACTTTGAA GAAGGCAAATTTGAGTCAATTAAGAAACAGAGAATGGCAGTAACAACATGGTTGGAGAGAATCCAGCTGACGTTTCTTGTGGAGTTCCTTGGGAAAGAAA GGTGTGCAGAGCACATCAAGGTGAACAAGCAGTTACAGAGAATGTTCAAAGTGAAGACAATGAAGAAATCGGCGGTAGAGAGACCGGTGGCGGGTTATCA CGTCGAGAGGGAAGAATTGAAGTCTCGGTTCTACCAGCCGAAACTAGATTGGATTCCTGACGAGGATAATGAGGAGGAGGGCATCAGCAGCAACGAAAAG CGGATCCAGAAGAGACTTGCTGCTAAATCGTCTAATTCATTGCGGAGCAAGGCAAACACTCAACACATGAAGCAGCTGCGCAAAGTAGCAGATGCAGACC GTGGCAAGAACATGTCTCAAGACTATGACTGA
AA sequence Show only first row Show all	>Lus10025970 pacid=23173097 polypeptide=Lus10025970 locus=Lus10025970.g ID=Lus10025970.BGIv1.0 annot-version=v1.0 MKPPSRRVTLAGYLDQLSDSEKHKTRKREEALQGIVQELTRNLNRDEPFLNSNRMSLVDQCLRVIAKGRSVEELAMATRAIGLVVMILDDAEAAHEIYRD SASKLFDAVKLSSSKLKLPAQVLQCFAVVTFFGAFLSEDRLESMEMLWSHYFQDSGHQGKEGNSPELIAAAISSWTFVLSNLNNGVNRRHWQTKIPCLFY LMEHGDESVVIAAAEALALIFEIDPRSNGPRRLAENCNDGDGAESSSSSSSPSNEFKSSIAKKLNEIMALKKTMYDDEEGKEQDQTTVTTRLALLADYFE EGKFESIKKQRMAVTTWLERIQLTFLVEFLGKERCAEHIKVNKQLQRMFKVKTMKKSAVERPVAGYHVEREELKSRFYQPKLDWIPDEDNEEEGISSNEK RIQKRLAAKSSNSLRSKANTQHMKQLRKVADADRGKNMSQDYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10025970 [exp]	0	1
AT4G13200			unknown protein		Lus10011869 [exp]	7.6	0.7694
AT2G33250			unknown protein		Lus10023703 [exp]	10.2	0.7519
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	16.4	0.7573
AT1G34570			Essential protein Yae1, N-term...		Lus10019775 [exp]	20.2	0.6485
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	22.2	0.7222
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	29.1	0.7426
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	36.5	0.7377
AT2G39170			unknown protein		Lus10018298 [exp]	41.9	0.6488
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10025724 [exp]	43.1	0.6194
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10041166 [exp]	50.5	0.6967

Compare expression of checked genes

Lus10025970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.