Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51130 704 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014270 [exp] 815 / 0 AT3G51130 701 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117200 [exp] 724 / 0 AT3G51130 711 / 0.0 unknown protein Potri.007G015800 [exp] 716 / 0 AT3G51130 706 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03676 [flax] [poplar] UPF0183 Uncharacterised protein family (UPF0183)
Representative CDS sequence Show only first row Show all	>Lus10025972 pacid=23173119 polypeptide=Lus10025972 locus=Lus10025972.g ID=Lus10025972.BGIv1.0 annot-version=v1.0 ATGCAACAACACCACCAGCGATCACGGCCCCGCTGCGAAGGCACAGCTATGGGCGCCATCGTCCTCGATCTCCGCCCTGGCCTCGGTATCGGCCCCTTTT CTCTCGGGATGCCAATTTGCGAAGCCTTCGCTCAGATTGAGCAACAGCCTAATCTCTACGATGTTGTCCATGTGAAGTACTACGACGAGGAACCGTTGAA ACTTGACATTGTTATTAGCTTTCCAGATCATGGTTTTCACCTTCGATTCGATCCTTGGTCCCAGAGGCTAAGACTGGTGGAGATCTTTGATGTAAAACGG CTTCAAATGCGCTATGCCACTTCTATGATTGGTGGACCGGGCAGCATGGCTACGTTTGTTGCTGTGTATTCTCTTTTTGGCCCTACGTTTCCTGGAATCT ATGACAAGGATAGAGGAGTTTATACTCTTTTTTACCCGGGCCTATCGTTTGCGTTTCCAATTCCTGGGCAGTATGCGGACTGCTGTCAGGATAGAGAAGC TGAACTTCCTCTGGAGTTTCCAGATGGAACAACACCAGTCACATGTCGGGTGTGTGTATATGATGGTTCGAGTGACAAAAAAGTTGGTGTTGGATCCCTT TTGGATAAGGCTGTTACCCCTCCTTTACCTTCTGGCAGTCTGTACATGGAAGAAGTGCAAGTAAAGCTTCATGAAGAGTTGTTCTTTTCAATCGGAGGGC AGCATATTCCGTTTGGGGCATCACCACAGGATGTATGGACAGAATTAGGCCGCCCTTGTGGAATCCATCAAAAGCAGGTAGATCAGATGGTTATCCACTC TGCGTCAGACCCTTCTCCACGAACTACACTTTGTGCTGATTACTTCTATAATTATTTCACTCGAGGTTTGGACATCTTATTTGATGGGCAGACCCATAAA ATTAAGAAGTTTGTTCTCCATAGCAATTATCCTGGCCATGCAGACTTCAACTCTTACATAAAGTGCAATTTTGTTATCCAAGTAAATAACTCGAAGCAGA GGATCACTCCTAGCACCAAATGGGAGCAAGTAAAGGAGATCTTAGGGGATTGTGGTCGTGCAGCTATCCAAACACAAGGTTCTACAAGCAATCCGTTTGG ATCCACCTTTGTATATGGGTACCAGAACATTGCCTTGGAGGTGATGAAAAATGGGCATATTGCTACTATAACTCTTTTCCAGTCATGA
AA sequence Show only first row Show all	>Lus10025972 pacid=23173119 polypeptide=Lus10025972 locus=Lus10025972.g ID=Lus10025972.BGIv1.0 annot-version=v1.0 MQQHHQRSRPRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNLYDVVHVKYYDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLVEIFDVKR LQMRYATSMIGGPGSMATFVAVYSLFGPTFPGIYDKDRGVYTLFYPGLSFAFPIPGQYADCCQDREAELPLEFPDGTTPVTCRVCVYDGSSDKKVGVGSL LDKAVTPPLPSGSLYMEEVQVKLHEELFFSIGGQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPSPRTTLCADYFYNYFTRGLDILFDGQTHK IKKFVLHSNYPGHADFNSYIKCNFVIQVNNSKQRITPSTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIALEVMKNGHIATITLFQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51130			unknown protein		Lus10025972 [exp]	0	1
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	2.4	0.9163
AT2G38480			Uncharacterised protein family...		Lus10001266 [exp]	3.5	0.9138
AT1G70160			unknown protein		Lus10010721 [exp]	4.0	0.9184
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	4.7	0.9039
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	4.9	0.9081
AT4G27020			unknown protein		Lus10043107 [exp]	5.0	0.8899
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	6.0	0.9163
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	6.3	0.9141
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	7.0	0.9088
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	8.5	0.9045

Compare expression of checked genes

Lus10025972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.