Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51120 473 / 4e-143 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G16485 368 / 3e-104 nucleic acid binding;zinc ion binding;DNA binding (.1) AT2G18090 188 / 1e-48 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT5G08430 140 / 3e-34 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G63700 110 / 2e-24 zinc ion binding;DNA binding (.1) AT5G23480 109 / 3e-24 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G14880 47 / 1e-05 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 47 / 2e-05 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 45 / 3e-05 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 46 / 0.0002 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014271 [exp] 2598 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 786 / 0 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014272 [exp] 668 / 0 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10042072 [exp] 388 / 1e-110 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 371 / 5e-105 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10020897 [exp] 90 / 4e-18 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10019640 [exp] 48 / 5e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 45 / 0.0005 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10002106 [exp] 40 / 0.0008 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016000 [exp] 587 / 0 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 584 / 0 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 410 / 2e-118 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 367 / 6e-104 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 146 / 4e-35 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 135 / 1e-32 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.001G305900 [exp] 118 / 4e-27 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain CL0673 [flax] [poplar] PF03126 [flax] [poplar] Plus-3 Plus-3 domain CL0673 [flax] [poplar] PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10025973 pacid=23173247 polypeptide=Lus10025973 locus=Lus10025973.g ID=Lus10025973.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGCAGCAGCAGCAGCAGGTGTCCAGGATTTGGAAAGGGGAAGGAGAGCAGAGTCAGCGGGGTGGTGTTTTTGACAGTTTGCTAAGGGGAG TTGGAGCTGAGGACATGACTATCGATCAGTGTGAGGCGATTCGGGAAATGGACGACTCTCAGCTCATCGGAGCTCCTGTCGCGGTATCAGCAGACGTTGC TGCTAAAGTAGACTCGGCGGCTACTGTGGACGTTCGAGTTGGGAATGCGGTTGCTGCTGTACCTGAGATCAGTACTGTGAAGAGGAGGCGTGGTCGGCCT CCGCGTAATCAGGGGAAAGTAGTAGCGCCTCCTCCGAAGGCGATGGAGGAAGAAGATGTTTGTTTCATTTGCTTCGACGGTGGTAGCTTAGTGCTATGCG ATCGCCGAATAGGAAACAAAATGTGTATTTATTATGGTTGGATTATTGCTGAACTATTTTTCACCATTGCTTTCGAGCATGGTATACATGGACGCTCTTT GCCATTACAAGCTCAAGTGGACTTTGATGATAAACGTAACTGGGAGTATCTTTTTAAAGTGTATTGGGTTTGCCTTAAAGAAGGCTTGTCCTTGACAGTA GATGAACTTTTAAAGGCTAAAAATCCCTGGAATGTTGATGAGTTACCTAAAGCTAAAAGCCCTTGGAAAGTTCCTGCTGCTGTGGATCCTGTGTCAGAAT CTTCAGGTGAACTTTATTATGGTCGTGATGAAAAGGCTACTTCTTCAGGAAACAGCTACGGGAGCTTGGAGACTAACTATTCCAAGAGAAGAAAATATGA TGTTGAGCCTAAGAATTTAACTGATGAAAAACCTGTAGGTACTGAAAAGTCGAGTATTTCAAAAGTTGCACCTTTGCCAGAGGGCATGCAATGGGCAACA AAGGAGCTCATAGAGTTTGTTGCCCATGTGAGAAACGGGGACACATCTTTTCTATCTCAGTTTGATGTGCAGGCTCTTTTGCTAGACTACATTAAAAGAA ACAATCTTAGTGATTCTCGCCGAAAAAGTCAGATTCTTTGTGATACAAGACTAATAAACCTCTTTGGGAAAACACGTGTGGGTCATATTGAGATGCTGAA GATTCTTGAAAACCACTTCCTCGTGAAAGAAAATCCCCCGTGTGATGAATCTGTTAGGGTAGACATAGCTGCTGCTGCTGCCGAGGGTAGCTGCACTCAT CCTTCTGTAGGTATCGGTAATGGCATTGTGGTTAACAATGATAGAAGGCGTAAGACGCGCAAAAGGATGGATGAGAAAGTTAATCAGATCAATCCCAATC CAGATGAATATGCAGCAATTGATGTTCACAATATCAATTTGTTGTACTTGAAGCGTAGTTCGATGGAGAATCTTATGATTGATGCTGATAAGTTTCACGA GAAAGTTGTTGGGTCATTTGTACGTATTAGGATTCCTTGTGGCGATCATCGACAAGATGTGCACCGGCTCGTTCAAGTTGTAGGAACTGGCAAGGCAGCT CAATCATATAAGCTTGGCATAAGAATAACTGATATAATGCTTCAAATAATGAACTTAGACAAGAAGGAAGTTGTGTCAATCGATGGAATCTCAGACCAAG ATTTCTCAGAGGAAGAATGCAAGCGTCTAAGACTGAGTGTAGGATCAGGCCTCATAAAGCTTATGAAGGTGGGTGCAATCCAGGAGAAAGCAAAGGCACT TCATTCTGTCAAAGTGACCGATTTCCTGGAAGCAGAAATAGCACAGCTTACTCATCTTCGTGATCGAGCTAATGAGGAACGACAACGGAGGTTGCTTGAG GTCCCCATCGTTCATTCTGATCCAAATATTGGTTTCGGGTCATCCAGCCATGGACAAAATAGTCATGCAGTGGTGTCTGAACCTATCTCTGCAGCTGCCC CTGTGATGCATTATCCTCCAACAACCAGTGTGGTACCCCTTAATGATGAAGAGAGACTTTGGCATTATCGTGATCCATTTGGAACGGTTCAAGGGCCCTT CCCTATGATGCAGCTGAGAAGATGGAGTACAAGTGGGCTATTCCCCCTGGATCTGAGAGTATGGATGGTGAATGGGAAGGAGGAAGAGTCTATTCTCTTG ACTGATGCTTTACTAGGATTGTTCCGTAGAGAGCCTCTGTTGCCTGCAAACAACCATATGCCTCCCCAGGAAGTAACCACTGATTGTAGTGATAAAGATA AGATGTGGAATCGCGTGTCAAGTCAGGATACTTCAACAAACCAGATGCCTCCTCAGGAAGTAATTACTAATTGTGGTGATAGAGGTAAGAATTTGAACCT TCGTCAGGATACTTCGACAAACCATATGCCTCCACAGGAAGTAATCAGTGATTACAGTGATAAAGATAAAAAGTGGAACCCTGCGTCAAGTCAGGATACT TCGACGAACAATATCCCTCCCCAGGAAGTAATCACTGACTGCAGTGATAAAGATAAGAAGTGGAACAGTTTGTCAAGTCAGGATACTTCGACAAATCACA TGGATAAAAATAAAGATGATCAAAATGGGCCATCTGAGAGAAATGATATAAGCAGCATGGATGTTGGTAATGATGAAGTAAGGAGTAATGAGCTGGGTTC TCGTTCGTCCAGGTTGACCATGTTAGTGGATCTTGTCATTGGCAGTAATGAACTAGACCAAAAATCCGAGCAGCCCTGCGAATTGTCCAAGAACGATAAG TCTGGTGTCAGTCAGTCTCAAATTTGTGATTCAGTTGCTTCACCTTCTGCTTCTGCCAAAGAGCGTGATGGTGATGCCGAGACGTTGCCGGTGGCACAAG TTGTTGAAGAGGAGAATAGGAGTACCAGTGTGAATGATGTAAAGAGAAGTCCTAAGGAGCAAACCGTTGTTGAAGAGGGTGATGAAAAGAAAGGAAAAAG TGAAGGTTGTGCCAGCCAGTCGTCTGGACAGAGTTGGCACTCTACACCTATGAACATCTCGTATGGATGGGATCTCAACTCTACTTTCCCTTCTATGGTT AATTCAAACGGGACGGTAAAGAATGAGCAGGAAGTTGATTTCTCTGAGATAGGAACTTCATTGCCAAAGCAAAGCAATGAGGACTCAAAAGGTCCGAGCG TCGGCGAAAGCAAACACTCAGTCTCTTGCAATGTACCCATCATTGATGCAGGGCCTAGCTGGAGCACTACTTCAAGTTTAGTTGCTGGGGTACGGCTTCC TGACGTGGCTGCTGAATGGACAAGATATTCCTCTCCTGCAAAACCTTCCGTCGAGGACTGGGGTTCCAATCTTGTGTCTGCATCGTCCTTGAGGCCACCT AATGGTTCGAGTGATCACGGTACCATACCGACTTCAGGAGCTGGTGAACTGAGACATACTGCACCGTCGATTGATGCAGGAGGTTGGCAGGCAATGGTGT CTGAACCCAATGAGTTCTCATTAGTCGATGAATCTGTTTCAGATCTTTTGGCTGAAGTTGAGGCAATGGAGTCTCTTGGTGGTTTGCCGTCCCCTACTTC CAAACTGAGCTGCGTCGGAGATTTGATGCACGTTTCAGACAATGACTGCTTTAGCCCCGTCGAGGATTTCAGTCCTGCGCCTGTTCATGGGAGGAGTGAT GCATTGAGCTCCACTGGGGATATACAAATGCCAGGTCGAATATCTGTAGCGGAGGAACAACTTGGCCTATCTATCATGCCTTCTCATCCAATAGTACCGA GGGATTCACTCGAGAAAACCCAGAAGCCTCCCCAGTTGACAGTAACTGAACCATTCCACATATCTCTCATGCTTTCTCAGCCACTTGTAACAAGTAAACC CCAGAGTGCTGCTGTCCCGACTCTGCAGCATCGTCAATCACAGGCAGAAGGGTCTTTTGGTATAACGCGTACCGATGTTCGTGATTCTCAGAAGAGCAGC TCCAATGGCCACTCGAGCAACGAGGTGGAGAGAGAGAGACCACACAGTGTTAAATCGAACCGGTGGGAAGGGAGTTCAGAAACACAGAATCATAACCAGT CAAGTTCAAGACAACCAAAGCTGGAGTTAGACATCCACCTCCCATTTGGCTCGAATACAAGCCGTCATCAAGTGGAAGCAAAGCCAGACATCCAGTTTCA TGCCCCAGCCTCGGTAGATTTGAGACTAGGGAACTCAAGAGGGCAGCGTTCAATTCTTGGGATAGCACCTGGCATTGCTGCTCAAGGAAATACAAGCACT CATTTAGGCAGTACCGGTCACAGCTCAGTCAAGAAACAAGCTAGCCAATACCCTGCAGCACCTGCAGCAGGGATTCCCAGTCTGTTGGGAAGTCCTAGGC ATGGTGGCGACAAACATTCTGGGTCGAGAGAGCACCGGAGCCATCATCAGAGCAGTAGAGATTTGGGTTATGGTAGAGAAAGATCGACATGGAATGGCAG CAGCAGGCAGTCATCTCATGGTGGCCACGGAGGTGGCGGATCTTTCAAAGGGGCGCCAAAAGGGCCGAGAGTGTGCAAGTTCTATGAAAACGGGTATTGC AAGAAGGGAGCATCTTGTAGTTTTTGGCATCCATCATGA
AA sequence Show only first row Show all	>Lus10025973 pacid=23173247 polypeptide=Lus10025973 locus=Lus10025973.g ID=Lus10025973.BGIv1.0 annot-version=v1.0 MEQQQQQQQVSRIWKGEGEQSQRGGVFDSLLRGVGAEDMTIDQCEAIREMDDSQLIGAPVAVSADVAAKVDSAATVDVRVGNAVAAVPEISTVKRRRGRP PRNQGKVVAPPPKAMEEEDVCFICFDGGSLVLCDRRIGNKMCIYYGWIIAELFFTIAFEHGIHGRSLPLQAQVDFDDKRNWEYLFKVYWVCLKEGLSLTV DELLKAKNPWNVDELPKAKSPWKVPAAVDPVSESSGELYYGRDEKATSSGNSYGSLETNYSKRRKYDVEPKNLTDEKPVGTEKSSISKVAPLPEGMQWAT KELIEFVAHVRNGDTSFLSQFDVQALLLDYIKRNNLSDSRRKSQILCDTRLINLFGKTRVGHIEMLKILENHFLVKENPPCDESVRVDIAAAAAEGSCTH PSVGIGNGIVVNNDRRRKTRKRMDEKVNQINPNPDEYAAIDVHNINLLYLKRSSMENLMIDADKFHEKVVGSFVRIRIPCGDHRQDVHRLVQVVGTGKAA QSYKLGIRITDIMLQIMNLDKKEVVSIDGISDQDFSEEECKRLRLSVGSGLIKLMKVGAIQEKAKALHSVKVTDFLEAEIAQLTHLRDRANEERQRRLLE VPIVHSDPNIGFGSSSHGQNSHAVVSEPISAAAPVMHYPPTTSVVPLNDEERLWHYRDPFGTVQGPFPMMQLRRWSTSGLFPLDLRVWMVNGKEEESILL TDALLGLFRREPLLPANNHMPPQEVTTDCSDKDKMWNRVSSQDTSTNQMPPQEVITNCGDRGKNLNLRQDTSTNHMPPQEVISDYSDKDKKWNPASSQDT STNNIPPQEVITDCSDKDKKWNSLSSQDTSTNHMDKNKDDQNGPSERNDISSMDVGNDEVRSNELGSRSSRLTMLVDLVIGSNELDQKSEQPCELSKNDK SGVSQSQICDSVASPSASAKERDGDAETLPVAQVVEEENRSTSVNDVKRSPKEQTVVEEGDEKKGKSEGCASQSSGQSWHSTPMNISYGWDLNSTFPSMV NSNGTVKNEQEVDFSEIGTSLPKQSNEDSKGPSVGESKHSVSCNVPIIDAGPSWSTTSSLVAGVRLPDVAAEWTRYSSPAKPSVEDWGSNLVSASSLRPP NGSSDHGTIPTSGAGELRHTAPSIDAGGWQAMVSEPNEFSLVDESVSDLLAEVEAMESLGGLPSPTSKLSCVGDLMHVSDNDCFSPVEDFSPAPVHGRSD ALSSTGDIQMPGRISVAEEQLGLSIMPSHPIVPRDSLEKTQKPPQLTVTEPFHISLMLSQPLVTSKPQSAAVPTLQHRQSQAEGSFGITRTDVRDSQKSS SNGHSSNEVERERPHSVKSNRWEGSSETQNHNQSSSRQPKLELDIHLPFGSNTSRHQVEAKPDIQFHAPASVDLRLGNSRGQRSILGIAPGIAAQGNTST HLGSTGHSSVKKQASQYPAAPAAGIPSLLGSPRHGGDKHSGSREHRSHHQSSRDLGYGRERSTWNGSSRQSSHGGHGGGGSFKGAPKGPRVCKFYENGYC KKGASCSFWHPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	0	1
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	1.0	0.9468
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	1.7	0.8821
AT3G17900			unknown protein		Lus10036712 [exp]	2.8	0.8744
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	6.8	0.8826
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	9.8	0.8641
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	10.7	0.7898
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	10.8	0.8425
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	13.8	0.8476
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	14.0	0.8696
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	15.2	0.8644

Compare expression of checked genes

Lus10025973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.