Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18090 389 / 2e-118 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT3G51120 369 / 5e-107 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G16485 332 / 3e-93 nucleic acid binding;zinc ion binding;DNA binding (.1) AT5G63700 153 / 2e-38 zinc ion binding;DNA binding (.1) AT5G08430 59 / 2e-08 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G35605 48 / 3e-06 SWIB/MDM2 domain superfamily protein (.1) AT4G22360 49 / 1e-05 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 47 / 0.0001 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 46 / 0.0001 SWIB complex BAF60b domain-containing protein (.1) AT4G34290 44 / 0.0001 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014272 [exp] 1998 / 0 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025973 [exp] 818 / 0 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014271 [exp] 801 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10042072 [exp] 332 / 6e-93 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 331 / 1e-92 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10016581 [exp] 49 / 2e-05 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 49 / 2e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 49 / 2e-05 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 49 / 3e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016000 [exp] 486 / 5e-147 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 479 / 2e-144 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 358 / 5e-102 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 357 / 1e-101 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 162 / 1e-41 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 147 / 9e-36 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 54 / 5e-07 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.006G010700 [exp] 49 / 1e-05 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 49 / 3e-05 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.005G134500 [exp] 47 / 5e-05 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10025974 pacid=23173110 polypeptide=Lus10025974 locus=Lus10025974.g ID=Lus10025974.BGIv1.0 annot-version=v1.0 ATGACTACCTTTCTCCAAAGGGAAAAGAGAGAGGAAGAAGAGCTGTGGAAGAAAGAAATACCATTGCTCTGTCCTTCCAGTCCACTTCCACGTGCCCCCC ACTATCTCCACCGCCGATCATTCCCTCCTTCCTCCTACGACCTAGGCAGTAGCGTTTGCCTTTTCCTTGATGATTCTCTAATCGAACTTCACAACTCCGA CGAGATGGAACAAGTGCAGCAGCAGCAGCAGGTGGCCAGGACGTGGAAAGGGGAAGGAGAGCAGAGTCAGCGGGGTGGTGTTTTCGACAGTTTGCTACGG GGAGTTGGAGCTGAGCACATGACCATCGATCAATGCGAGGCGATTCGGGAAATGGACATCGGAGCCCCTGTCACGGTCTCAGCAGACGTTGCTGCTAAAG TAGACTCGGCGGCTACTGTGGACGTCCAAGTTGGAAATGCGGCGGCTTTTGTTCCTGATATCAGTGTGGTGAAGAAGAGGCGTGGTCGGCCTCCGCGTAA TCAGGGGAAAGTAGCGCCTCGGACGTCGACGAAGGCGATGGAGGAAGAAGATGTTTGTTTCATTTGCTTCGACGGCGGTAGCCTAGTGCTATGTGATCGC CGGGGCTGCCCTAAAGCATACCACCCAGCTTGTATCAAGAGGGAGGAAGCTTTTTTCCAATCAAACGCCAAATGGAACTGCGGGTGGCATATATGCAGCA GTTGCGAGAAGGCATCTCATTTCATGTGCTACACATGCCCATACTCTCTTTGCAAAGGGTGCGCCAAATTTGCTGATTACTTATGCGTGAGAGGAAATAA AGGTTTTTGTCGATCATGCATGAAAATGATAATGCTGATAGAAAATTTACCAGCTGAGAATAGTGAGCAGGTTCAAGTGGACTTTGATGACAGTACTAGC TGGGAGTATCTTTTCAAAGTGTATTGGGTTTGCCTTAAAGAAAGCTTGTTATTGACAGTAGAAGAAATACTAAAGGCTAAAAATTCCGGGCAAGTCAATG AAGTACCTAAAACTAGAAGCCCCTGGAAGGTTTCTGCTGTTATGGATCCTGTATCAGAATCTTCAAGTGAACTTTGTTATGGTCGTGATGACAAGGCTAC TTCTTCAAGCAACAGCTATGGAAGCCTGGATACGAACTATTCTAAGAGAAGAAAATATGATGTGGAACCTAAGGTTTTAAGTGATGAAACATCTGTAGGT ACTGAAAAGTCGAGTGTTTCTAAAGTTGCACCTATGCCGGAGGGCACGAAATGGGCAACAAAGGAGCTCTTAGAGTTGGTTACACATGTGAGAAATGGGG ATGCATCTTTTCTATCTCAGTCTGAAGTGCAGGTTCTTTTGTTAGAATACATTAGAAGAAACAATCTTCGTGATCCTCATAGAAAATGTCAGATTCTTTG TGATACAAGACTAATAAACCTCTTTGGGAAAACATGTGTTGGTCATATCGAGATGGTGAAGCTTCTTCAATATCACTTGCTTATGAAAGAAAACCCCTCG CATGATGAATCTGTTAGGGTAGACATAGCTGTTGCTGGTGCTGGTACTGCTGCTGCAGAGTGTAGCTGCACTGAGGTTCCCTTTGCCCATTCTTATCCAA ATATGGGTCCACATTGCAAGTCGGAAGGAAATATAAAAGAAGCCAAAGATCATCTAAAATTGAACCATGAAGGAATGGGTTCATCCAACCGTGGACAAAA TATATCTGCAGTTTCCTCGGTCATGCATTTTCCTCCTCCAACTACCGAAGGAGTGATATCTAATAATGATGATGAGTTACAGCGACTTTGGCATTATCGT GATCCATTTGGAACTGTTCAAGGGCCCTTTCCTATGGTGCAACTGAGGAATTGGAGTATAAGTGGGCTATTCCCCTTGGATCTGAGAGTATGGATGATGA ATGGAGAGGAGGCAGAGTCTGTTCTTTTGACTGATGCTTTACTTGGTTCGTTCCATAAGGAAATAATAACTGATCGTAGTGATAAAGATAGTAAGTGGAA TTGTGCATCAAGTCAGGATACTGCTGCAACTCATATTGATGAGAATACAGTTCATCAAAATGGGCAGCCTGAGAAAAAGGATTCAAGTAGCACGGATGTT GGTAATGGTGAACTTACCAGTAATAAAGAGCTAGGTTCTCACTCTTCCAGGTTGACCATGTTATTGGATCTTGTCATTGGGAGTAATGAACTAGATCAAA ATTCTGAGCAGCTCTGTGACTTGTCCAGAAATAGTAACTCTGATGGCAGTCAGTCTCAAATTTGTGATTCAGTTGCATCACCTTCTACTTCGGTTAAAGT GTGTGACGTCAAGATGTTGGATGTGACACCAGTCAATGGAGAGGAGAATAAGAGTACCGGTGTTTGTGATGTAATGGGAAGCCCTCATAAGACAAACCCT AAGGAGCAAATCGTTGTTGAAGACAGTGATGGAAATGAAGTAAAAAATGAAGGTTGTTCCAGCCAATCTTCTGTGCAGAGTTGGCATCCTACACACATGA ACATCTCGTATGGATGGGATCTCAACTCTACTTTTCCGTCAATGGTTAATTCACATGGGGCAGTAAAGAATGAACAGGAAGTTAGTTTCTCCGAGGTAGG AAGTTCATTGCCAAAACAAGATAATGTGGACACAAAAGATCGAAGTGGCGAACAAAAATACTCTGTTTCGTGCAATGTATCCACCATTGATGCAAAAGGC CCCAGCACTACTTCGAGATTAGTTGGTGGTGCACGGCTTCCAGATGTTGCTGCTGAATGGACAGGATACTCCTCTGTTCACACAAAACCTTCTGTTGGGG ACTGGGGTTCCAATCTTGTCTCTGCATCATCCTTGAGGCTACCTAATGGCTCAAGTGGTCATGCTTCCATACCAACTTCAGGAGCTGGTGACCTGAGACA TACTTCGTTGTCGCATGCATCAATTGATACAACAGGATGGCAGGCAATGGTCTCTGAACCCAACGAGTTCTCTTTAGTTGATGAATCCGTTTCAGATCTT TTGGCCGAAGTTGAGGCAATGGAGTCTCTCGGTGGATTTCCGTCCCCTACTTCCAAACTGAGCTGCGTTGGAGATGTGATGCATGTTTCGGATAATGATT GCTTTAGTCCTATTGAGAATTTCAGCCCTGCTCCTCCTCATGGGAGAAGTGCTGCATTGAGCTCTGCTGGGAATATACAAATGTCATCTCGACTATCTGT AGCGGAGGAACAACTTGGCCTATCTATCATGTCTTCTCAGCCAATTGTACCGAGGGATTCACTTGAGAAAACAAAAAAGCCTCCCCAGTTGACAGTTACC GAACCATTTCACATATCTCTGATGCTCCCGCAGCCTCTCGTAACAAGTGAACCCCAGAGTGCTACAGGCCCGACCCCATCTCTTCTATTACAGTCAGAAG GCCCTATTGGCAATATACGTCCCAATGTACGTGAAGCTCTAAAGAACTCCAGTGGACACCGGAGCAATGAGGTGGAGAGAGGTTCAGGACTGCACAATGT TACAGCTAACTGGTGGGGAGGGACTTCGGAAGCACAGGCTCACCAGTCAAGTTCAAGACAAGCAAAGCTGGATTTAGACATCCAGCTTCCGTCTGCCTCG AATGTGAGTCGTCAAGTGGAAGCCAGGTCAGACGTCCAGTTTCCTGCCCCAGCCTCGGTAGATTTGAGATTAGGGAACTCCAGAAGGGGTTCAATTCGTG GCATAGCACCTGATATTGCTTCTCAAGGAAATACAAGCACTCATTCAGGTACCAGTCAGGGCTCAGTTAAGAAGCAAAGTACCCAACACTCAACCACTTC CACAGGGCATTCAACTACCAGCACTGGGAATCCCAGTGTGTTTGGAAACCAGCCGAAGCATCAAAGTAGCAGAGGTTCAGGTTTTGGTAGGGAAAGGTCA ATGTGGAACGGCAATAACAGGCAGTCTCCTTACGGAGGAGACTCTTTCAGATCACCGCCCAAAGGGCAGCGAGTGTGTAAATTTTACGAAAGCGGGTGTT GCAAGAAGGGAGCGTCTTGTAGTTTTTGGCACCCATCGTGA
AA sequence Show only first row Show all	>Lus10025974 pacid=23173110 polypeptide=Lus10025974 locus=Lus10025974.g ID=Lus10025974.BGIv1.0 annot-version=v1.0 MTTFLQREKREEEELWKKEIPLLCPSSPLPRAPHYLHRRSFPPSSYDLGSSVCLFLDDSLIELHNSDEMEQVQQQQQVARTWKGEGEQSQRGGVFDSLLR GVGAEHMTIDQCEAIREMDIGAPVTVSADVAAKVDSAATVDVQVGNAAAFVPDISVVKKRRGRPPRNQGKVAPRTSTKAMEEEDVCFICFDGGSLVLCDR RGCPKAYHPACIKREEAFFQSNAKWNCGWHICSSCEKASHFMCYTCPYSLCKGCAKFADYLCVRGNKGFCRSCMKMIMLIENLPAENSEQVQVDFDDSTS WEYLFKVYWVCLKESLLLTVEEILKAKNSGQVNEVPKTRSPWKVSAVMDPVSESSSELCYGRDDKATSSSNSYGSLDTNYSKRRKYDVEPKVLSDETSVG TEKSSVSKVAPMPEGTKWATKELLELVTHVRNGDASFLSQSEVQVLLLEYIRRNNLRDPHRKCQILCDTRLINLFGKTCVGHIEMVKLLQYHLLMKENPS HDESVRVDIAVAGAGTAAAECSCTEVPFAHSYPNMGPHCKSEGNIKEAKDHLKLNHEGMGSSNRGQNISAVSSVMHFPPPTTEGVISNNDDELQRLWHYR DPFGTVQGPFPMVQLRNWSISGLFPLDLRVWMMNGEEAESVLLTDALLGSFHKEIITDRSDKDSKWNCASSQDTAATHIDENTVHQNGQPEKKDSSSTDV GNGELTSNKELGSHSSRLTMLLDLVIGSNELDQNSEQLCDLSRNSNSDGSQSQICDSVASPSTSVKVCDVKMLDVTPVNGEENKSTGVCDVMGSPHKTNP KEQIVVEDSDGNEVKNEGCSSQSSVQSWHPTHMNISYGWDLNSTFPSMVNSHGAVKNEQEVSFSEVGSSLPKQDNVDTKDRSGEQKYSVSCNVSTIDAKG PSTTSRLVGGARLPDVAAEWTGYSSVHTKPSVGDWGSNLVSASSLRLPNGSSGHASIPTSGAGDLRHTSLSHASIDTTGWQAMVSEPNEFSLVDESVSDL LAEVEAMESLGGFPSPTSKLSCVGDVMHVSDNDCFSPIENFSPAPPHGRSAALSSAGNIQMSSRLSVAEEQLGLSIMSSQPIVPRDSLEKTKKPPQLTVT EPFHISLMLPQPLVTSEPQSATGPTPSLLLQSEGPIGNIRPNVREALKNSSGHRSNEVERGSGLHNVTANWWGGTSEAQAHQSSSRQAKLDLDIQLPSAS NVSRQVEARSDVQFPAPASVDLRLGNSRRGSIRGIAPDIASQGNTSTHSGTSQGSVKKQSTQHSTTSTGHSTTSTGNPSVFGNQPKHQSSRGSGFGRERS MWNGNNRQSPYGGDSFRSPPKGQRVCKFYESGCCKKGASCSFWHPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	2.4	0.9417
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10006166 [exp]	2.8	0.9171
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	3.5	0.9322
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	4.0	0.9303
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	4.1	0.8951
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	4.6	0.9315
					Lus10034752 [exp]	7.3	0.8939
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10024314 [exp]	7.7	0.8906
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	7.7	0.9055
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	8.1	0.9218

Compare expression of checked genes

Lus10025974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.