Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 691 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 547 / 0 Cytochrome P450 superfamily protein (.1) AT3G26310 306 / 1e-98 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G07990 305 / 5e-98 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26300 297 / 6e-95 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G48320 296 / 1e-94 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G26320 293 / 2e-93 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48280 292 / 4e-93 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48310 285 / 2e-90 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT1G01280 285 / 2e-90 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014273 [exp] 886 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 751 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 701 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 699 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 699 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 687 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 590 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 539 / 0 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10016601 [exp] 339 / 5e-111 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 738 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 726 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 633 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G084700 [exp] 339 / 2e-111 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 337 / 1e-109 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 334 / 2e-109 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 330 / 9e-108 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G167900 [exp] 328 / 6e-107 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 328 / 9e-107 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 328 / 1e-106 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025975 pacid=23173113 polypeptide=Lus10025975 locus=Lus10025975.g ID=Lus10025975.BGIv1.0 annot-version=v1.0 ATGGATCCAATCCTACTAGCTTTCCTATTCCTAATCCCATTCATCTTCCTCTTCCCGCTCCTCCGTCGCCGCTCCCGCCGCCTCCCTCTCCCGCCGGGTC CAAAGGGCCTCCCCATAATAGGCAACATGCTTATGATGGACCAGCTGACCCACCGCGGCCTGGCCAACTTGGCCAAGCAATACGGCGGCGGGGGAATATT CCATCTCAAGATGGGGAACCTCCACATGGTCACGGTCTCATCTGCGGACGTGGCACGCCAGGTGCTCCAAGTCCACGACAACATCTTCGCCAACCGCCCT GCCAACATCGCGATCAGCTACCTCACCTACGACCGGTCCGACATGGCGTTCGCACACTACGGGCCCTTCTGGCGCCAGATGAGGAAGATCAGCGTCATGA AGCTCTTCAGCCGCAAGCGGGCCGAGTCGTGGGAGTCGGTCCGTGACGAGGTTGACTGCATGGTCAAGACCGTGGCGGTCAACGCCGGGAAGGCTATCAA CGTCGGGGAGCTTATTTTCACTTTGACCATGAATATTACGTACAGGGCGGCGTTCGGGTCCAAGAACGAAGGGCAGGACGAGTTTATAAAAATACTTCAG GAGTTCTCGAAGCTGTTTGGGGCTTTCAACATTGCCGATTTTATCCCTGGACTTGGTTGGATGGACCCGAGTGGTTTGAATACTAGGCTGGTCAACGCGC GCAAAGCGCTCGACAAGTTTATTGACAAAATCGTTGACCAGCATCTCGAGAAGAAGAAGCTGAACGGCGGCGTTTTTCAGGGTGAGGATTCCAACCCGGA TATGGTGGACGAGTTGCTTGTGTTTTTTAATGAAGATTCTTCCGGCTCGGTTACCGATACTTCCGAATCTATTAAGCTCACCAAGGACAACATTAAAGCG ATCATCATGGATGTGATGTTCGGTGGGACCGAGACGGTGGCGTCGGCAATCGAGTGGGCCATGGCCGAGCTAATGAAGAGCCCAGACGATTTACGATGCG TTCAGGAGGAGCTTGCTGACGTGGTGGGGCTCAACCGCCATGTGGAAGAGAGCGACTTTGACAAACTCACCTTCATGAAATGCACCATCAAGGAGACGCT CCGCCTCCACCCGCCGATTCCTCTCCTCCTCCATGAGGCGGCGGAGGACGCCGAGGTCTCGGACTATTTCATCCCGAAAAAGTCAAGGGTTATGATCAAC GCATTCGCCATCGGGCGGGACCCGAAATCATGGGCCGACCCGGACACGTTCAAGCCCGCCAGGTTCTTAGAGGAAGGGATGCCAGACTTCAAAGGGAGCA ACTTTGAATTTCTGCCGTTCGGGTCGGGTAGGAGGTCTTGCCCCGGGATGCAGCTGGGCCTATACGCGCTGGACCTCGGGGTGGCCCACTTACTTCACTG TTTCAAGTGGGAGTTGCCCGATGGGATGAAGTCGAGCGATTTGGACATGAGTGATGTTTTCGGACTTACCGCTCCACGGGCGACCCGGTTGGTTGCGGTT CCCACCCCTAGATTGACGTGCCCGCTCTGA
AA sequence Show only first row Show all	>Lus10025975 pacid=23173113 polypeptide=Lus10025975 locus=Lus10025975.g ID=Lus10025975.BGIv1.0 annot-version=v1.0 MDPILLAFLFLIPFIFLFPLLRRRSRRLPLPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGGGIFHLKMGNLHMVTVSSADVARQVLQVHDNIFANRP ANIAISYLTYDRSDMAFAHYGPFWRQMRKISVMKLFSRKRAESWESVRDEVDCMVKTVAVNAGKAINVGELIFTLTMNITYRAAFGSKNEGQDEFIKILQ EFSKLFGAFNIADFIPGLGWMDPSGLNTRLVNARKALDKFIDKIVDQHLEKKKLNGGVFQGEDSNPDMVDELLVFFNEDSSGSVTDTSESIKLTKDNIKA IIMDVMFGGTETVASAIEWAMAELMKSPDDLRCVQEELADVVGLNRHVEESDFDKLTFMKCTIKETLRLHPPIPLLLHEAAEDAEVSDYFIPKKSRVMIN AFAIGRDPKSWADPDTFKPARFLEEGMPDFKGSNFEFLPFGSGRRSCPGMQLGLYALDLGVAHLLHCFKWELPDGMKSSDLDMSDVFGLTAPRATRLVAV PTPRLTCPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	0	1
AT1G17010			2-oxoglutarate (2OG) and Fe(II...		Lus10030941 [exp]	2.4	0.8497
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	3.0	0.8838
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	4.5	0.8324
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	9.2	0.8093
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	13.2	0.8312
					Lus10028940 [exp]	14.4	0.8073
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	17.7	0.8242
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	18.2	0.8007
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023160 [exp]	20.1	0.8190
					Lus10033191 [exp]	22.5	0.7993

Compare expression of checked genes

Lus10025975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.