Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51070 882 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 793 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 772 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 771 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 537 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 525 / 4e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 494 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 446 / 1e-146 Putative methyltransferase family protein (.1) AT2G39750 439 / 2e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 431 / 6e-141 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014274 [exp] 1330 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 1035 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 987 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 808 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 806 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 796 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 785 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 769 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 739 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118100 [exp] 928 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 925 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 813 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 812 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 806 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 785 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 543 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 494 / 3e-164 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 440 / 2e-144 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 437 / 3e-143 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025976 pacid=23173219 polypeptide=Lus10025976 locus=Lus10025976.g ID=Lus10025976.BGIv1.0 annot-version=v1.0 ATGGCAATCGGACGGCCATCTCGCTCCGGCAAGCGGAGCTCTTCCTCATCTTCTTCATACACCACCACCATTACAACCGTCCTCTTCATCACACTATGCG TTCTCGCCGTCTGGATGCTCACTTCAACCTCTCTGCAGGGTCCCATACAAACCGCCACTCCCGCCCGCAAGGCCGCCTCCTCCGGGACCGTGGCCGACAT TGTCCTCGATCCGTCTCAAAATCTCGAGATTGCTGCTAGTACTAGTAGTACTGCCGGAAAGAATAAGCAATCCGTTTTCGAGGATAACCCTGGGGATCTC CCTGCCGATGCCATCAAATCGGACGAGAACAACAACAATAACCACCAGGCTTCTGCAGAGGAGAAGGAGAAGCATACTCAGATATCGGAGGAGAGCACGA TGACCACCGCCCAGAGCGTTAATCAACAGGTGATCGTCGAGGAGACGACTTCGAAGAATAATGATAACGGCAAGAAAGAGATTGAATTACAACCTGAGGA GCAGCAACAGCAGCAGAGAATGGAGGATGCTGGAATTCAGAATCCAGTTGAAGAGAAGCCTGAAAATAAGGTAACGGAGGAAGATCAGGATCAGAGGATA CAGCAACAACAGGAAATGCACGATGCTCAGAAGGCCGAAATGACGGCCCAACAAAAGCAGCAGAAGGAGATGAAGATGGACGTTGATGCTCATAGGCCAG TGGAGGTAATTACTCCAGAGGAGAAGCCGGATGACATGTCGTTTTCGGAGGGTGGAGGAGCATCATCATCTTCATCAGAGATTCCCAAGGAGTCAAAGGA GTCGAAGAAATCATGGTCGACTCAGGCAAGTGAGTCTGAGAGCCAGAAGGAGAGGAGGACAGAAGATGATGAACAGGCCAAAGGTGAAGCTGAAGTGTGG AAGCTATGCAATGTGACGGCCACTACTGATTATATTCCTTGTTTGGATAACGAGAAGGCGTTGAAGAAACTAAGGACAACTGGACATTTTGAGCACCGAG AGAGGCATTGCCCTGAAGATCCGCCAACTTGCTTGATATGGTACCACAATGTCCCTCGTACGAAATTGGCAGAAGTTAAGGGACATCAAAACTGGGTTAA GGTAACCGGAGAGTTCTTGACATTCCCCGGAGGTGGAACTCAGTTTATCCATGGAGCTCTCCATTACATAGATTTCCTGCAGAGGGCAGTGCCGAAGATT GCATGGGGAAAACGTACCAGAGTGATTTTGGATGTTGGTTGCGGTGTAGCCAGTTTTGGTGGATACATCTTTGAAAGAGATGTTCTTACCATGTCGTTTG CTCCCAAGGATGAACATGAAGCTCAAGTTCAGTTTGCGCTAGAGAGAGGCATTCCGGCTATATCTGCCGTGATGGGCTCTAAACGTTTGCCATTCCCAAG TGCTGTTTTTGACGCCATTCACTGTGCTCGATGCAGAGTCCCCTGGCATAAAGAAGGAGGTCTTTTGCTCCTGGAATTGAATCGTCTTCTTCGGCCTGGA GGGTACTTTATTTGGTCAGCAACTCCAGTGTACCAAAAGCTCCAGGAAGATGTCGAAATTTGGCAAGCAATGTCTGCGTTGACTGTAACAATGTGTTGGG AACTTGTGACAATCAAGAGAGACAAACTTAACAAGATTGGAGCTGCTATCTACCGCAAGCCCACAACCAATGATTGTTATGATCAGAGGAAGAAAAATGA ACCTCCAATGTGTGCAGATGATGATGATTCAAATGCTGCCTGGTCTGTCCCACTGCAGGCATGCATGCATAGAGTTCCTTCTGAGCCGAGCATCCGAGGG ACCGAATGGCCAGATGATTGGCCTGCAAGATTACAGAAGCCTCCTTACTGGCTCAACAGCTCTCAGATGGGGATCTACGGCAAACCAGCACCCCAAGACT TCACAACAGATTATAAGCACTGGAAAAATCTGGTGACTAAGACGTATATGAAAGGACTGGGAATCAGTTGGGACGGCGTGAGAAATGTTATGGACATGAG AGCTGTGTATGGCGGTTTCGCAGCAGCTCTGAAGGATATGAAGGTGTGGGTGTTGAATGTGGTGACTGTAGATTCTCCAGACACCCTTCCAATAATATAC GAGAGAGGTCTGTTTGGGATCTACCATGACTGGTGTGAATCCTTCAGCACTTACCCTAGGACTTATGATCTGGTTCATGCTGATCATCTTTTCTCAAAGT TGAAAACCAGGTGCAAACTTGTACCTGTAGTGGCAGAGGTTGACAGAATACTCAGACCGGGAGGTAAGTTCATCGTTCGAGACGAATCAAATACGATACA GGAAGTCGAGAGCATACTCAAGTCTCTGCATTGGGAGGTTACCTTGTCCAAGAACCAAGAAGGTGTACTTAGTGCACAGAAAGGCGACTGGCGGCCTGAG ACATTTGAAGCTTCTTCATGA
AA sequence Show only first row Show all	>Lus10025976 pacid=23173219 polypeptide=Lus10025976 locus=Lus10025976.g ID=Lus10025976.BGIv1.0 annot-version=v1.0 MAIGRPSRSGKRSSSSSSSYTTTITTVLFITLCVLAVWMLTSTSLQGPIQTATPARKAASSGTVADIVLDPSQNLEIAASTSSTAGKNKQSVFEDNPGDL PADAIKSDENNNNNHQASAEEKEKHTQISEESTMTTAQSVNQQVIVEETTSKNNDNGKKEIELQPEEQQQQQRMEDAGIQNPVEEKPENKVTEEDQDQRI QQQQEMHDAQKAEMTAQQKQQKEMKMDVDAHRPVEVITPEEKPDDMSFSEGGGASSSSSEIPKESKESKKSWSTQASESESQKERRTEDDEQAKGEAEVW KLCNVTATTDYIPCLDNEKALKKLRTTGHFEHRERHCPEDPPTCLIWYHNVPRTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQRAVPKI AWGKRTRVILDVGCGVASFGGYIFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSKRLPFPSAVFDAIHCARCRVPWHKEGGLLLLELNRLLRPG GYFIWSATPVYQKLQEDVEIWQAMSALTVTMCWELVTIKRDKLNKIGAAIYRKPTTNDCYDQRKKNEPPMCADDDDSNAAWSVPLQACMHRVPSEPSIRG TEWPDDWPARLQKPPYWLNSSQMGIYGKPAPQDFTTDYKHWKNLVTKTYMKGLGISWDGVRNVMDMRAVYGGFAAALKDMKVWVLNVVTVDSPDTLPIIY ERGLFGIYHDWCESFSTYPRTYDLVHADHLFSKLKTRCKLVPVVAEVDRILRPGGKFIVRDESNTIQEVESILKSLHWEVTLSKNQEGVLSAQKGDWRPE TFEASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10025976 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026582 [exp]	2.8	0.6885
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	5.7	0.7046
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	7.6	0.6908
AT5G20610			unknown protein		Lus10025003 [exp]	9.5	0.6901
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10028773 [exp]	9.9	0.6882
					Lus10008327 [exp]	11.0	0.6901
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	12.2	0.6901
					Lus10039431 [exp]	13.3	0.6154
					Lus10010697 [exp]	13.4	0.6901
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	14.5	0.6901

Compare expression of checked genes

Lus10025976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.