Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51050 549 / 0 FG-GAP repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014275 [exp] 1128 / 0 AT3G51050 950 / 0.0 FG-GAP repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017600 [exp] 588 / 0 AT3G51050 1107 / 0.0 FG-GAP repeat-containing protein (.1) Potri.005G118300 [exp] 580 / 0 AT3G51050 1110 / 0.0 FG-GAP repeat-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025977 pacid=23173207 polypeptide=Lus10025977 locus=Lus10025977.g ID=Lus10025977.BGIv1.0 annot-version=v1.0 ATGAGGAAGCGCGATTTGGCAATTCTCATGCTTTCGGCTTTTGCTATCTTCTTCTCCCTTCAGCACGAAGGAGATTTTTCGTTTCGAGAGGCGTGGTTCC ATCTTTCTGACGAGTATCCAATCAAGTACGAAGGCGAACGGCTTCCTCCTCCTGTTGTAGCTGATCTAAATGGTGACGGGAGGAGAGAAGTCCTTGTTGC CACTCACGATGCCAAAATTCAGGTGTTAGAGCCTCATTCTAGGCGAGTGGATGAAGGGTTTAGTGAAGCAAGAGTGCTGGCGGAGGTGTCATTGTTGCCT GATAAAATCAGGGTTGCGTCTGGCAGACGAGCAGTGGCTATGGCTACTGGTGTTGTCGATAAGATTTATAAGCAAGGGGTGCCACTAAAGCAGGTCTTGG TGGTTGTTACTTCCGGTTGGTCGGTAATGTGCTTTGATCATAACCTTAAAAAGCTCTGGGAAACAAGTCTGCAGGAAGATTTTCCTCATAACGCTCACCA TAGGGAGATTTCAATATCTATAAGTAATTATACGCTAAAGCATGGCGATGAAGGTTTGATCATAGTTGGTGGTAGGATGGAAGTGCAGCCACATATTCAC TGGGACCCATTTGAAGACATCGGTGCGGCTGAAAGAAGTGCAGAACAGCACAGAAGAAGCGCTACCGAGAAGGAGGCTTCAGAGAACTCTGGAACTACCA ATCTGCGCCATTTTGCTTTCTATGCATTCGCTGGTCGAACTGGTCAACTTCGATGGAGTAGAAAGAATGAGAATATTGAAGAGAAGACTTCAGATGTGTC TCAGTTGATTCCACAGCACAATTACAAGCTGGATGTGCATGCTCTGAATGCTCGTCAACCTGGAGAGGCTGCAACTTATGCTGGTTCTGCTAAATCTAAG AAGCAGTTGAACTACATCCCAACCATAACCAACTACACTCAGCTATGGTGGGTTCCCAATGTTGTTGTTGCACATCAAAAGGAGGGGATAGAAGCTCTTC ATTTAGCTTCTGGCCGTACCCTTTGTAAGCTCCATCTACAAGAAGGTGGTCTTCATGCTGATATTAACGGAGACGGCGTCCTTGATCATGTCCAGGCATG TATATGTTCCTTTGATCTGTTTCTGCTTTTCTATTTGTTTCCCTTGCTTGATCTATTTACACTGGCTGTGGGTGGTAATGGAGCTGAGAAAACTGTTGTT ACTGGATCAATGGAAGTGCTGCGACCCTGCTGGGCTGTTGCGACCTCTGGGGTACCAGTGCGAGAGCAACTTTTCAACGTTTCAATATGTCATCATACAC TATTGAATTTATTCCAACATGGAGAGTTCTCTAGAAACTTCGGTCATGCTGCAGACGTGTCGTCTTTAGAAGTAGCAGCCCCGATTCTCATTCCAAGAAG TGATGGCCATAAACATCGAAAGGGGAGCCATGGAGATGTTATTTTCTTGACCAATCGTGGGGAGGTGACATCATATACCCCTGGGTTGCATGGCCATGAT GCAGTATGGCAGTGGCAGCTGATGACATATGCTACTTGGTCGAACCTTCCTTCTCCGTCAGGGATGACAGAAACCGGGAACGTTGTCCCCACACTTAAGG AATTCAAACTTCGTCCACACGACAACCGACCGATGATCCTCGCAGCTGGAGACCAAGAAGCTGCAGTAATATCTCCAGGCGGCAGTATACAGACGACGAT CGAGTTGCCATCAGCTCCCACCCACGCCATTATTGCCGAAGATTTCTCAAATGACGGGCTTACAGATCTGATTGTGGTGACATCAAACGGGGTTTACGGG TTTGTCCAGACCAGGACTCCCGGTGCCTTGTTCTTCAGCACATTGGTCGGTTGCCTTTTGATAGTGATGGGAGTAATCTTTGTTACGCAGCACCTCAACT CCATGAAAGGAGGAAAGCCTCGAGCTTCTGGTGTGAGGTAA
AA sequence Show only first row Show all	>Lus10025977 pacid=23173207 polypeptide=Lus10025977 locus=Lus10025977.g ID=Lus10025977.BGIv1.0 annot-version=v1.0 MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSDEYPIKYEGERLPPPVVADLNGDGRREVLVATHDAKIQVLEPHSRRVDEGFSEARVLAEVSLLP DKIRVASGRRAVAMATGVVDKIYKQGVPLKQVLVVVTSGWSVMCFDHNLKKLWETSLQEDFPHNAHHREISISISNYTLKHGDEGLIIVGGRMEVQPHIH WDPFEDIGAAERSAEQHRRSATEKEASENSGTTNLRHFAFYAFAGRTGQLRWSRKNENIEEKTSDVSQLIPQHNYKLDVHALNARQPGEAATYAGSAKSK KQLNYIPTITNYTQLWWVPNVVVAHQKEGIEALHLASGRTLCKLHLQEGGLHADINGDGVLDHVQACICSFDLFLLFYLFPLLDLFTLAVGGNGAEKTVV TGSMEVLRPCWAVATSGVPVREQLFNVSICHHTLLNLFQHGEFSRNFGHAADVSSLEVAAPILIPRSDGHKHRKGSHGDVIFLTNRGEVTSYTPGLHGHD AVWQWQLMTYATWSNLPSPSGMTETGNVVPTLKEFKLRPHDNRPMILAAGDQEAAVISPGGSIQTTIELPSAPTHAIIAEDFSNDGLTDLIVVTSNGVYG FVQTRTPGALFFSTLVGCLLIVMGVIFVTQHLNSMKGGKPRASGVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	0	1
AT4G01290			unknown protein		Lus10036389 [exp]	5.2	0.7787
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	6.3	0.7771
AT1G31780			unknown protein		Lus10035691 [exp]	6.9	0.7868
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	7.1	0.7713
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	10.8	0.7516
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	11.0	0.7629
AT1G19870		IQD32	IQ-domain 32 (.1)		Lus10033167 [exp]	12.3	0.7795
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	20.1	0.7490
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	21.0	0.7626
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	24.7	0.7531

Compare expression of checked genes

Lus10025977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.