Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 1387 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 1134 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 1064 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 928 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT2G28470 910 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G52840 910 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 897 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G32810 825 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 762 / 0 BGAL7 beta-galactosidase 7 (.1) AT1G77410 750 / 0 BGAL16 beta-galactosidase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041798 [exp] 1464 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 1367 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10037644 [exp] 1120 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1115 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 1113 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10024292 [exp] 1103 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10000803 [exp] 1043 / 0 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10006009 [exp] 921 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 915 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018100 [exp] 1460 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 1293 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 1125 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.004G159800 [exp] 1112 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G200400 [exp] 1112 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1109 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 904 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.009G012400 [exp] 899 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 844 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 835 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10025980 pacid=23173159 polypeptide=Lus10025980 locus=Lus10025980.g ID=Lus10025980.BGIv1.0 annot-version=v1.0 ATGGGAACTCAATCATTCTCCAAGCTCTTATGTCGGCTGTTGCTGTGGTGCTTGTTTGGCTTATTGGGTTCAATGCATGTCCAAGCAATAGTGACTTACG ATAGGAAAGCAATTGTAATTAACGGGGAAAGGCGAATCCTTTTCTCTGGCTCCATTCACTACCCGAGAAGCACTCCTGATATGTGGGAAGATCTGATACA GAAGGCTAAAGATGGTGGGGTAGATGTAATAGAGACCTATGTGTTCTGGAATGTGCACGAACTCAGTCCTGGAAATTACAATTTTGAAGGCAGAAACGAT TTGGTGAGGTTCATCAAGACCATCCATAAAGCAGGTCTCTATGCTCATCTCCGCATTGGACCATACGTTTGTGCTGAATGGAACTTCGGAGGGTTTCCGG TTTGGTTGAAGTACATTCCTGGGATCAGCTTCAGAACTGATAATGAGCCTTTCAAGAGAGCAATGCAAGGATTCACTGAGAAGATAGTGGGGTTAATGAA GAGTGAAAGCTTGTTCGAGTCGCAAGGTGGCCCCATCATTCTTTCCCAGATTGAAAATGAGTATGGTGCGCAAAGCAAGATGCTTGGTGCTGATGGGTAT AACTACATGAGCTGGGCTGCGAACATGGCTGTTAAGATGGGAACTGGAGTTCCATGGGTTATGTGCAAGGAAGACGATGCTCCCGATCCAGTTATAAACA CATGCAATGGATTTTACTGTGATACATTTGCTCCCAACAAACCATACAAACCTACATTATGGACTGAAGCTTGGAGTGGATGGTTCTCAGAGTTTGGGGG TCCTAATCATCAGCGCCCAGTTGAGGATTTGGCATTCGCTGTTGCTCGGTTTATACAGAAGGGAGGATCATTTGTCAACTACTACATGTACCATGGAGGG ACTAATTTCGGGCGGAGTGCTGGAGGGCCTTTCATCACTACCAGCTATGACTATGATGCTCCACTAGATGAATATGGTTTGATAAGGCAGCCTAAGTATG GTCATCTTAAGGAGCTCCACAGGGCAATTAAGATGTGCGAGCGTGCTCTCGTCTCGGCCGATCCTGTCATGACTCAGTTAGGAGCCTACCAACAGGCTCA TGTATACTCTACGAAACCAGGAGGAGATTGTGCAGCTTTTCTTGCCAACTACGACACGAAATCTGCTACGAAAGTGATGTTCAACAACGTGCATTTCAAC TTGCCTCCTTGGTCCATTAGCATTCTTCCGGATTGCAGAAACGTTGTGTTTAACACTGCAAAGGTTGGGGTCCAAACATCTCAAATGGAAATGCTGCCAA CAAACACTGAAATTCCGTCCTGGGAAAGTTACGATGAGGATGTTTCCTCTGTAAGTGACGGCTCGACACTAGCAACTTCTGGTCTCCTGGAGCAGATAAA TGTAACAAGAGATATCAGTGACTACCTGTGGTACATAACTAGTGTCGACATTGATGCATCCGAATCTTTCCTGCGCGGAGGAGAAATGCCTACTCTAATT GTTCAATCAAGTGGCCATGCCGTGCATGTCTTTATCAATGGAGAGCTCTCAGGTTCTGCATTTGGAACAAGGGAGGACAGAAAGTTTACTTACAGAGGCA AGGTCAACCTACGTAGCAGGATGAACAAAATTGCATTGCTGAGCGTTGCTGTTGGACTTCCCAATGTGGGTGGACACTTTGAGACATGGTACACAGGAGT CTCGGGTCCTGTTGTTCTTCATGGACTTGACCAGGGGAAGTTAGACTTGTCTTGGCAAACCTGGTCTTACCAGGTTGGACTCAAAGGAGAAGCCTTGAGT CTACTCTCTCCAACTGGTGTCTCTTCTGTTGAATGGATGCAATCGGCAGAAAAGCAACAGCAACCTCTGAGTTGGCATAAGTCTCATTTCAATGCCCCTG AAGGCGATGAGCCATTGGCTTTGGACTTGGAAGGTATGGGGAAGGGTCAGATATGGATCAATGGTCAGAGTATAGGGAGATACTGGACTGCACATGCTGT CGGTCAATGCAATGGCTGTAGTTATACCGGATCATTCCGTCCTCCGAAGTGTCAACTCGGATGTGGTCAGCCAACTCAAAGATGGTATCACGTGCCGCGA TCATGGCTGAAACCGACCCAGAACCTCTTGGTAGTTTTCGAGGAACTTGGAGGGGATCCTTCCAGTATTTCGCTCGTGAAAAGATCAGTGACAACCGTCT GTGCTGAGGTAGCGGAGTTCCACCCGACTCTCGAGAACTGGCAGATTGAAGAAAATGGAAGAACTGAAGAGTTCCACAGCCCAAAGGTTCATCTTCAGTG TAACAAAGGCCAGTCCATTTCCTTCATCAAGTTTGCAAGCTTTGGGACTCCTCTAGGAACTTGTGGCAGTTATCAGCAAGGAACTTGCCATGCTTCCACC TCCAGCAACATCCTAGAGAAGAATTGCATAGGGAAACAGAGATGTGCTGTAACGATAGCAAACAACAACTTTGGACAGGATCCTTGCCCAAATGTTTTGA AGAAGTTATCTGTTGAAGCATTTTGTGCCCCAACAAATTTGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10025980 pacid=23173159 polypeptide=Lus10025980 locus=Lus10025980.g ID=Lus10025980.BGIv1.0 annot-version=v1.0 MGTQSFSKLLCRLLLWCLFGLLGSMHVQAIVTYDRKAIVINGERRILFSGSIHYPRSTPDMWEDLIQKAKDGGVDVIETYVFWNVHELSPGNYNFEGRND LVRFIKTIHKAGLYAHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKRAMQGFTEKIVGLMKSESLFESQGGPIILSQIENEYGAQSKMLGADGY NYMSWAANMAVKMGTGVPWVMCKEDDAPDPVINTCNGFYCDTFAPNKPYKPTLWTEAWSGWFSEFGGPNHQRPVEDLAFAVARFIQKGGSFVNYYMYHGG TNFGRSAGGPFITTSYDYDAPLDEYGLIRQPKYGHLKELHRAIKMCERALVSADPVMTQLGAYQQAHVYSTKPGGDCAAFLANYDTKSATKVMFNNVHFN LPPWSISILPDCRNVVFNTAKVGVQTSQMEMLPTNTEIPSWESYDEDVSSVSDGSTLATSGLLEQINVTRDISDYLWYITSVDIDASESFLRGGEMPTLI VQSSGHAVHVFINGELSGSAFGTREDRKFTYRGKVNLRSRMNKIALLSVAVGLPNVGGHFETWYTGVSGPVVLHGLDQGKLDLSWQTWSYQVGLKGEALS LLSPTGVSSVEWMQSAEKQQQPLSWHKSHFNAPEGDEPLALDLEGMGKGQIWINGQSIGRYWTAHAVGQCNGCSYTGSFRPPKCQLGCGQPTQRWYHVPR SWLKPTQNLLVVFEELGGDPSSISLVKRSVTTVCAEVAEFHPTLENWQIEENGRTEEFHSPKVHLQCNKGQSISFIKFASFGTPLGTCGSYQQGTCHAST SSNILEKNCIGKQRCAVTIANNNFGQDPCPNVLKKLSVEAFCAPTNLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	0	1
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	1.0	0.9423
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	2.4	0.9417
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	4.2	0.9209
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	4.6	0.9287
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	6.9	0.9242
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	6.9	0.9154
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	8.3	0.8713
AT1G33330			Class I peptide chain release ...		Lus10008558 [exp]	9.3	0.8660
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	10.8	0.9279
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	11.8	0.9206

Compare expression of checked genes

Lus10025980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.