Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07280 100 / 1e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G29670 97 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47080 89 / 7e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 45 / 8e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 43 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005863 [exp] 111 / 3e-26 AT2G29670 462 / 6e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001206 [exp] 105 / 3e-24 AT1G07280 457 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10040683 [exp] 98 / 8e-22 AT2G29670 474 / 5e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018221 [exp] 98 / 9e-22 AT2G29670 486 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043203 [exp] 56 / 1e-09 AT2G29670 102 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 48 / 8e-06 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 48 / 1e-05 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 47 / 3e-05 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 47 / 3e-05 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191600 [exp] 112 / 7e-27 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 105 / 2e-24 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 103 / 2e-23 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 46 / 2e-05 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 46 / 3e-05 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 46 / 4e-05 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 45 / 6e-05 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 44 / 9e-05 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 44 / 0.0002 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025981 pacid=23173205 polypeptide=Lus10025981 locus=Lus10025981.g ID=Lus10025981.BGIv1.0 annot-version=v1.0 ATGGTGAGATCTTCACAATCTTGCGATGGATCTGGCTTCGATTGTCGCGACTACCACAACGAGGAGATTTGTGAACATTTTGATCGATCTCCCGTGAATT ATCATCAAAATATCGAAAGTGATGTTCATATTCAATTTTTTCAAGAGGCGGGGGAAATTCAGAACAATAACAACGACGATGGTTCCGTTGGATATTATAG CTACATGTCATGTTGGGTGTCATCAAAGCTCGAGCTTTTCGACCCGAGCTTTTTCAGGATGAAACTGGATCCGGCACCGGAGTACTGGCCGGAGGATGAG GGTACAGAGAGGAGTGCGGAGTTTGCTCTAGAAGTCCAACGGAGGAGAAGAGCTACAAACAATGTGGCAATAAGGACTACATTACACCCTTCTTTAAAAA TGGTAAAAGCTAAGAATAACCTCTCAACTGCCAATAACAATTATTGGCAAGACCCCCCCCCACCTGCCAATAACAATTATTGGCAAGTGGCGGGTGATTT TTCATATTGCTCTGTCAGAAAAGTGTTCTCGGTGACGGTTTTCATGATTCGGGAGCTTTTGAGCTACATGCTTCGTATAAGGGAGAGTCTTTACAGCGAG GATTTACGCAAGGTGATGGATCGAGTCCAAATAGAGATCAACTACACGTTCGTATGGCTCTTCGAGAGTGTCTTCGCTAGTACGCCAACTCTCATGGTGT CCGTGATGTTACTCTTAGCGAATTTCACGGCCCATTCGATGGCGGGCACCGCTGCAATCGCAGCAGCTTGCATTCCGAGGATTAGTACTACTTCAACATG TTATGATGATGAAGAAGAGGACATTGGCGGAGGAGAAGAAATGATGATCACTTCGCAAGAGAAAGAACTTTGGGCTACAATGTTGAAACAAGCTACAAAG TTCGAATTGGAGGATGTTCATGAAGGTTCACAACTTGGAGATTGTGTAAGAACCAGCAATTACATGCTTTACCATACAACAATCGACGAAAGTCCGAGAT ACTCTCTTCTTCTCCTAAACTCTGCGCTCTTCCTCAATCCAAACCCTCAAGTTCTTGACAGGGCGGAGGAATGCTACAAGAGGGCAATAATGATGGAGCC ATGGGATGCAGAGTTGAGAATTCTGTATGCGGATTTTTTGTGGTTGGTGAAGAAGGATCTGACAAGTGCAGAAGAGAGTTATCAAGAAGCAGTGGAAGTA GAACCAAACTACTATCACACTTTCAAGTATGCAACTTTTTTACTGGAAACTGGCAGTTCCGATATTTGTTTCCCTCTCTATGATCTTGGTACTAATATTA GGTAG
AA sequence Show only first row Show all	>Lus10025981 pacid=23173205 polypeptide=Lus10025981 locus=Lus10025981.g ID=Lus10025981.BGIv1.0 annot-version=v1.0 MVRSSQSCDGSGFDCRDYHNEEICEHFDRSPVNYHQNIESDVHIQFFQEAGEIQNNNNDDGSVGYYSYMSCWVSSKLELFDPSFFRMKLDPAPEYWPEDE GTERSAEFALEVQRRRRATNNVAIRTTLHPSLKMVKAKNNLSTANNNYWQDPPPPANNNYWQVAGDFSYCSVRKVFSVTVFMIRELLSYMLRIRESLYSE DLRKVMDRVQIEINYTFVWLFESVFASTPTLMVSVMLLLANFTAHSMAGTAAIAAACIPRISTTSTCYDDEEEDIGGGEEMMITSQEKELWATMLKQATK FELEDVHEGSQLGDCVRTSNYMLYHTTIDESPRYSLLLLNSALFLNPNPQVLDRAEECYKRAIMMEPWDAELRILYADFLWLVKKDLTSAEESYQEAVEV EPNYYHTFKYATFLLETGSSDICFPLYDLGTNIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	1.7	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	2.4	1.0000
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	3.0	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	4.0	1.0000
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	4.2	1.0000
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	4.5	1.0000
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	5.1	0.9905
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	5.2	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	5.3	1.0000
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	5.5	0.9713

Compare expression of checked genes

Lus10025981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.