Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44230 167 / 5e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 139 / 3e-38 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 135 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 131 / 8e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 129 / 3e-35 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 129 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 128 / 9e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 126 / 5e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 126 / 6e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 125 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031989 [exp] 142 / 2e-39 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 138 / 3e-38 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 134 / 2e-37 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 134 / 7e-37 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 134 / 1e-36 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 132 / 4e-36 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 131 / 1e-35 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 131 / 1e-35 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004987 [exp] 129 / 1e-35 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119000 [exp] 214 / 3e-66 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 137 / 4e-38 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 136 / 1e-37 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 136 / 2e-37 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 134 / 9e-37 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 132 / 5e-36 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 132 / 6e-36 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 131 / 7e-36 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 130 / 2e-35 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G231200 [exp] 129 / 2e-35 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025982 pacid=23173276 polypeptide=Lus10025982 locus=Lus10025982.g ID=Lus10025982.BGIv1.0 annot-version=v1.0 ATGTTAGTGTTGGAAATTGTCAAATTGGCTTATCACATTCATGCAAATCCAATTATAGCCGAAATTGCGGCAGCCCATCTGTTCGAGCTCGAACCGGACG GTATTGGGAACTATATTCAGCTCTGCAGCACTTATGCAGCTGCTGAAAAATGGGACGATGTTTCTACGTTAAGGCGCATGATGAGAGGGAAAGGTCTCGA CAAGAATCCTGGATATAGATGGATAGAAGCAGAAAAGGGCGTTATTCATAAGTTTGTTGCCCAGGACACGACCCATCCAAAGTCCAGGGAAATGAAGCAG CTTCTTGAAGGTCTTCTAAACAAAATGGAGGCAAATGGGTACCAATGTAACCTGAGCACTATTCCGTACGGTGTGAGTGACGAGGAGAAGAGATCGGTTT TGATGACTCGTAGCGAGAAATTGGCATTGGCCTTTGGGCTATTATGTTCCAAACCAGGCTCCACCATCAGGCTTATGAAGAACATCAGGATTTGCGACTG CCATTTGTTCATGTGTGGAGCATCTTAA
AA sequence Show only first row Show all	>Lus10025982 pacid=23173276 polypeptide=Lus10025982 locus=Lus10025982.g ID=Lus10025982.BGIv1.0 annot-version=v1.0 MLVLEIVKLAYHIHANPIIAEIAAAHLFELEPDGIGNYIQLCSTYAAAEKWDDVSTLRRMMRGKGLDKNPGYRWIEAEKGVIHKFVAQDTTHPKSREMKQ LLEGLLNKMEANGYQCNLSTIPYGVSDEEKRSVLMTRSEKLALAFGLLCSKPGSTIRLMKNIRICDCHLFMCGAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10025982 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	4.5	0.7902
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	6.2	0.7286
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013056 [exp]	12.5	0.7107
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	13.6	0.7197
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	15.7	0.7197
					Lus10000400 [exp]	17.6	0.7197
					Lus10009372 [exp]	19.3	0.7197
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	20.8	0.7197
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	22.3	0.7197
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	23.6	0.7197

Compare expression of checked genes

Lus10025982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.