Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50980 78 / 3e-19 XERO1 dehydrin xero 1 (.1) AT5G66400 58 / 5e-11 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2) AT2G21490 47 / 3e-07 LEA dehydrin LEA (.1) AT1G20440 44 / 7e-06 AtCOR47, RD17, COR47 cold-regulated 47 (.1) AT1G20450 43 / 2e-05 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT4G38410 40 / 8e-05 Dehydrin family protein (.1) AT3G50970 39 / 0.0004 XERO2, LTI30 LOW TEMPERATURE-INDUCED 30, dehydrin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014280 [exp] 179 / 7e-59 AT3G50980 96 / 3e-26 dehydrin xero 1 (.1) Lus10041969 [exp] 53 / 4e-09 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2) Lus10017977 [exp] 46 / 2e-06 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013200 [exp] 41 / 0.0002 AT1G20440 50 / 1e-06 cold-regulated 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10025983 pacid=23173086 polypeptide=Lus10025983 locus=Lus10025983.g ID=Lus10025983.BGIv1.0 annot-version=v1.0 ATGGAAAGTTACCAGAATCAGCCCACCGCTGCTCGCCGCAACACAGACCAAACTGCCGTCCAAACCGATGAGTACGGCAACCCCATTAGACACTCTGCTG CTGCAACTGGCTATGGAGCAGCTCCAGCTGCTGGCTTTGCTGGCACTGGACATCATCATGGAGAAGGAGGGCATGGAATAACTGGGAAGCTTCACCGTTC CGGAAGCTCGTCCAGCTCCAGCTCTTCTGAAGATGATGGGCTAGGCGGGAGAAGGAAGAAGGACAAGAGTATGAAGCAGAAGATTAAAGAGAAGCTGCCA GGGGGGCACAAGGATGAATATGCTACTTCCACTACTACACCTGGCGTCTACGGCACAGCTGACGAGCCTCATCACAAGAAAGGCATTATGGAGAAGATCA AGGACAAGCTCCCTGGCGGCCACCGTGATGACACTTATTAG
AA sequence Show only first row Show all	>Lus10025983 pacid=23173086 polypeptide=Lus10025983 locus=Lus10025983.g ID=Lus10025983.BGIv1.0 annot-version=v1.0 MESYQNQPTAARRNTDQTAVQTDEYGNPIRHSAAATGYGAAPAAGFAGTGHHHGEGGHGITGKLHRSGSSSSSSSSEDDGLGGRRKKDKSMKQKIKEKLP GGHKDEYATSTTTPGVYGTADEPHHKKGIMEKIKDKLPGGHRDDTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10025983 [exp]	0	1
					Lus10038430 [exp]	11.4	0.7561
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	15.9	0.7077
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10038471 [exp]	17.8	0.7526
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	22.9	0.6754
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003264 [exp]	33.2	0.6453
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10003288 [exp]	58.1	0.6835
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	75.9	0.6625

Compare expression of checked genes

Lus10025983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.