Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56940 207 / 2e-70 Ribosomal protein S16 family protein (.1) AT4G34620 144 / 1e-45 SSR16 small subunit ribosomal protein 16 (.1) ATCG00050 50 / 6e-09 ATCG00050.1, RPS16 ribosomal protein S16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014281 [exp] 259 / 6e-91 AT5G56940 210 / 2e-71 Ribosomal protein S16 family protein (.1) Lus10025592 [exp] 132 / 4e-41 AT4G34620 137 / 2e-43 small subunit ribosomal protein 16 (.1) Lus10027058 [exp] 131 / 1e-40 AT4G34620 136 / 4e-43 small subunit ribosomal protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217400 [exp] 220 / 2e-75 AT5G56940 188 / 7e-63 Ribosomal protein S16 family protein (.1) Potri.013G128200 [exp] 138 / 2e-43 AT4G34620 139 / 6e-44 small subunit ribosomal protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00886 [flax] [poplar] Ribosomal_S16 Ribosomal protein S16
Representative CDS sequence Show only first row Show all	>Lus10025984 pacid=23173241 polypeptide=Lus10025984 locus=Lus10025984.g ID=Lus10025984.BGIv1.0 annot-version=v1.0 ATGGTCGTAAGGATCCGATTGTCGAGGTTTGGCTGCAAGAATAAGCCGTTCTATCGTGTCATGGCTGCGGATAGCAGATCTCCTCGAGATGGAAAACATC TTGAAGTACTGGGCTACTACAATCCATTGCCTGGTCAAGATGGTGGCAAAAGAATGGGTCTCAATTTTGAGCGAGTGAAATATTGGTTGTCAGTGGGTGC TCAAGCCTCAGACCCTGTACAAAGGATTCTGTTCAGAGCAGGAGTTCTCCCTCCGCCACCAATGTTGGCTATGGGACGCAAGGGTGGACCCCGTGATACC CGTCCTGTCGATCCGCTTACTGGAAAAGTATTGAACCAGGAGAAGGCAGTCACAGGAGGAACACAGTCAACTTCTGATGATGCAGCCCCAGTGTCTACAT CATGA
AA sequence Show only first row Show all	>Lus10025984 pacid=23173241 polypeptide=Lus10025984 locus=Lus10025984.g ID=Lus10025984.BGIv1.0 annot-version=v1.0 MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQASDPVQRILFRAGVLPPPPMLAMGRKGGPRDT RPVDPLTGKVLNQEKAVTGGTQSTSDDAAPVSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56940			Ribosomal protein S16 family p...		Lus10025984 [exp]	0	1
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	3.6	0.8905
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	5.1	0.8891
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	7.1	0.8701
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	7.3	0.8600
AT3G49890			unknown protein		Lus10011541 [exp]	8.1	0.8117
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	9.2	0.8636
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	9.5	0.8031
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	10.0	0.8640
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	12.4	0.8577
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	13.0	0.8192

Compare expression of checked genes

Lus10025984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.